RFX5 (Erinaceus europaeus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSEEUG00000010785 T318221_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.764 1.000
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.764 1.000
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.764 1.000
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.764 1.000
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.764 1.000
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.764 1.000
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.764 1.000
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.764 1.000
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.764 1.000
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.764 1.000
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.764 1.000
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.764 1.000
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.764 1.000
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.764 1.000
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.764 1.000
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.697 0.634
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.697 0.634
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.697 0.634
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.697 0.634
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000009822 RFX 1 72

Links

Other RFX family TFs
Other Erinaceus europaeus TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK07858.1 Cannabis sativa PK07858.1 D 0.000
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I 0.000
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I 0.000
BHLH30 Arabidopsis thaliana AT1G68810 I 0.000
BHLH32 Arabidopsis thaliana AT3G25710 I 0.000
BGIOSGA026937 Oryza indica BGIOSGA026937 I 0.000
BGIOSGA029777 Oryza indica BGIOSGA029777 I 0.000
Bo2g138630 Brassica oleracea Bo2g138630 I 0.000
Bo6g095860 Brassica oleracea Bo6g095860 I 0.000
Bo6g108270 Brassica oleracea Bo6g108270 I 0.000
Bo7g081980 Brassica oleracea Bo7g081980 I 0.000
Bra004015 Brassica rapa Bra004015 I 0.000
Bra004338 Brassica rapa Bra004338 I 0.000
Bra025158 Brassica rapa Bra025158 I 0.000
Bra026510 Brassica rapa Bra026510 I 0.000
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.000
F775_10096 Aegilops tauschii F775_10096 I 0.000
fgenesh2_kg.2__1138__AT1G68810.1 Arabidopsis lyrata fgenesh2_kg.2__1138__AT1G68810.1 I 0.000
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I 0.000
GLYMA01G22530 Glycine max GLYMA01G22530 I 0.000
GLYMA02G11190 Glycine max GLYMA02G11190 I 0.000
GLYMA10G34910 Glycine max GLYMA10G34910 I 0.000
GLYMA17G19570 Glycine max GLYMA17G19570 I 0.000
GLYMA20G32660 Glycine max GLYMA20G32660 I 0.000
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.000
GRMZM2G107276 Zea mays GRMZM2G107276 I 0.000
GRMZM2G526668 Zea mays GRMZM2G526668 I 0.000
GSMUA_Achr11G13440_001 Musa acuminata GSMUA_Achr11G13440_001 I 0.000
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.000
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I 0.000
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I 0.000
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.000
LPERR08G12910 Leersia perrieri LPERR08G12910 I 0.000
LPERR09G06880 Leersia perrieri LPERR09G06880 I 0.000
MLOC_66385 Hordeum vulgare MLOC_66385 I 0.000
MTR_1g093750 Medicago truncatula MTR_1g093750 I 0.000
OB03G21490 Oryza brachyantha OB03G21490 I 0.000
OBART03G11320 Oryza barthii OBART03G11320 I 0.000
OBART08G15650 Oryza barthii OBART08G15650 I 0.000
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.000
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I 0.000
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.000
OMERI09G07780 Oryza meridionalis OMERI09G07780 I 0.000
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.000
ONIVA08G16750 Oryza nivara ONIVA08G16750 I 0.000
ONIVA09G09550 Oryza nivara ONIVA09G09550 I 0.000
OPUNC08G13730 Oryza punctata OPUNC08G13730 I 0.000
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.000
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I 0.000
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.000
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I 0.000
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I 0.000
OS03G0260600 Oryza sativa OS03G0260600 I 0.000
OS08G0432800 Oryza sativa OS08G0432800 I 0.000
OS09G0410700 Oryza sativa OS09G0410700 I 0.000
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I 0.000
PGSC0003DMG400007457 Solanum tuberosum PGSC0003DMG400007457 I 0.000
POPTR_0008s11490 Populus trichocarpa POPTR_0008s11490 I 0.000
POPTR_0010s14010 Populus trichocarpa POPTR_0010s14010 I 0.000
PRUPE_ppa019406mg Prunus persica PRUPE_ppa019406mg I 0.000
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.000
Sb07g021170 Sorghum bicolor Sb07g021170 I 0.000
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I 0.000
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I 0.000
SELMODRAFT_46532 Selaginella moellendorffii SELMODRAFT_46532 I 0.000
SELMODRAFT_56610 Selaginella moellendorffii SELMODRAFT_56610 I 0.000
Si013911m.g Setaria italica Si013911m.g I 0.000
Si039730m.g Setaria italica Si039730m.g I 0.000
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I 0.000
Solyc04g078690.2 Solanum lycopersicum Solyc04g078690.2 I 0.000
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I 0.000
Solyc07g005400.2 Solanum lycopersicum Solyc07g005400.2 I 0.000
TCM_011873 Theobroma cacao TCM_011873 I 0.000
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I 0.000
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I 0.000
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I 0.000
TRIUR3_31897 Triticum urartu TRIUR3_31897 I 0.000
VIT_01s0011g02940 Vitis vinifera VIT_01s0011g02940 I 0.000
Ca_08440 Cicer arietinum Ca_08440 I 0.000
Ca_24775 Cicer arietinum Ca_24775 I 0.000
Cla000223 Citrullus lanatus Cla000223 I 0.000
Cla020671 Citrullus lanatus Cla020671 I 0.000
Pm029004 Prunus mume Pm029004 I 0.000
29738.m001043 Ricinus communis 29738.m001043 I 0.000
cassava16550.m1 Manihot esculenta cassava16550.m1 I 0.000
cassava46299.m1 Manihot esculenta cassava46299.m1 I 0.000
Cucsa.283920 Cucumis sativus Cucsa.283920 I 0.000
mg025182m Mimulus guttatus mg025182m I 0.000
mgf017635m Mimulus guttatus mgf017635m I 0.000
Aquca_002_01095 Aquilegia coerulea Aquca_002_01095 I 0.000
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I 0.000
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I 0.000
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I 0.000
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I 0.000
Carubv10017470m.g Capsella rubella Carubv10017470m.g I 0.000
Carubv10020515m.g Capsella rubella Carubv10020515m.g I 0.000
Ciclev10020323m.g Citrus clementina Ciclev10020323m.g I 0.000
Ciclev10031900m.g Citrus clementina Ciclev10031900m.g I 0.000
Eucgr.G02351 Eucalyptus grandis Eucgr.G02351 I 0.000
evm.TU.supercontig_53.118 Carica papaya evm.TU.supercontig_53.118 I 0.000
Gorai.008G186700 Gossypium raimondii Gorai.008G186700 I 0.000
Gorai.013G079600 Gossypium raimondii Gorai.013G079600 I 0.000
Lus10021711.g Linum usitatissimum Lus10021711.g I 0.000
Lus10034271.g Linum usitatissimum Lus10034271.g I 0.000
Lus10035056.g Linum usitatissimum Lus10035056.g I 0.000
Lus10041493.g Linum usitatissimum Lus10041493.g I 0.000
MDP0000271420 Malus domestica MDP0000271420 I 0.000
MDP0000319726 Malus domestica MDP0000319726 I 0.000
orange1.1g022782m.g Citrus sinensis orange1.1g022782m.g I 0.000
orange1.1g026943m.g Citrus sinensis orange1.1g026943m.g I 0.000
orange1.1g037785m.g Citrus sinensis orange1.1g037785m.g I 0.000
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.000
SapurV1A.0079s0530 Salix purpurea SapurV1A.0079s0530 I 0.000
SapurV1A.0304s0070 Salix purpurea SapurV1A.0304s0070 I 0.000
SapurV1A.3056s0010 Salix purpurea SapurV1A.3056s0010 I 0.000
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I 0.000
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I 0.000
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I 0.000
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N 0.000
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N 0.000
GLYMA01G02930 Glycine max GLYMA01G02930 N 0.000
GLYMA02G37720 Glycine max GLYMA02G37720 N 0.000
GLYMA14G36010 Glycine max GLYMA14G36010 N 0.000
GRMZM2G176141 Zea mays GRMZM2G176141 N 0.000
MLOC_12832 Hordeum vulgare MLOC_12832 N 0.000
MTR_5g066080 Medicago truncatula MTR_5g066080 N 0.000
OB09G16590 Oryza brachyantha OB09G16590 N 0.000
OGLUM09G10310 Oryza glumaepatula OGLUM09G10310 N 0.000
OLONG_011765 Oryza longistaminata OLONG_011765 N 0.000
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N 0.000
PRUPE_ppa019545mg Prunus persica PRUPE_ppa019545mg N 0.000
PRUPE_ppa026166mg Prunus persica PRUPE_ppa026166mg N 0.000
Sb02g024460 Sorghum bicolor Sb02g024460 N 0.000
Si030496m.g Setaria italica Si030496m.g N 0.000
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N 0.000
TCM_000997 Theobroma cacao TCM_000997 N 0.000
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N 0.000
VIT_18s0001g07410 Vitis vinifera VIT_18s0001g07410 N 0.000
Ca_14981 Cicer arietinum Ca_14981 N 0.000
Ca_18110 Cicer arietinum Ca_18110 N 0.000
Cla022500 Citrullus lanatus Cla022500 N 0.000
Pm002160 Prunus mume Pm002160 N 0.000
cassava34286.m1 Manihot esculenta cassava34286.m1 N 0.000
Cucsa.160650 Cucumis sativus Cucsa.160650 N 0.000
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N 0.000
Ciclev10002205m.g Citrus clementina Ciclev10002205m.g N 0.000
evm.TU.supercontig_55.51 Carica papaya evm.TU.supercontig_55.51 N 0.000
evm.TU.supercontig_65.63 Carica papaya evm.TU.supercontig_65.63 N 0.000
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N 0.000
Gorai.012G124100 Gossypium raimondii Gorai.012G124100 N 0.000
MDP0000562627 Malus domestica MDP0000562627 N 0.000
orange1.1g024930m.g Citrus sinensis orange1.1g024930m.g N 0.000
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N 0.000
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N 0.000
PK01498.1 Cannabis sativa PK01498.1 N 0.000