RFX7 (Felis catus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSFCAG00000029408 T318245_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.788 1.000
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.788 1.000
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.788 1.000
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.788 1.000
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.711 0.628
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.711 0.628
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.711 0.628
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.711 0.628
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.711 0.628
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.711 0.628
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.711 0.628
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.711 0.628
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.711 0.628
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.711 0.628
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.711 0.628
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.711 0.628
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.711 0.628
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.711 0.628
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.711 0.628
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFCAP00000024013 RFX 1 78

Links

Other RFX family TFs
Other Felis catus TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ebf2 Mus musculus ENSMUSG00000022053 D 0.000
EBF2 Homo sapiens ENSG00000221818 D 0.000
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I 0.000
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.000
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.000
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.000
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.000
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.000
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.000
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.000
EBF2 Monodelphis domestica ENSMODG00000016702 I 0.000
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.000
EBF2 Pteropus vampyrus ENSPVAG00000024254 I 0.000
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.000
EBF2 Sus scrofa ENSSSCG00000009655 I 0.000
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I 0.000
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.000
EBF2 Vicugna pacos ENSVPAG00000015422 I 0.000
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.000
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I 0.000
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.000
ENSAMXG00000021198 Astyanax mexicanus ENSAMXG00000021198 I 0.000
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.000
EBF2 Bos taurus ENSBTAG00000040390 I 0.000
EBF2 Canis familiaris ENSCAFG00000008918 I 0.000
EBF2 Callithrix jacchus ENSCJAG00000019921 I 0.000
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.000
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.000
EBF2 Equus caballus ENSECAG00000014179 I 0.000
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.000
EBF2 Gallus gallus ENSGALG00000000242 I 0.000
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.000
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.000
ENSMEUG00000009275 Macropus eugenii ENSMEUG00000009275 I 0.000
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.000
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.000
EBF4 Erinaceus europaeus ENSEEUG00000006485 N 0.000
EBF3 Procavia capensis ENSPCAG00000000348 N 0.000
Ebf4 Dipodomys ordii ENSDORG00000004139 N 0.000
ENSGMOG00000017386 Gadus morhua ENSGMOG00000017386 N 0.000