RFX3 (Monodelphis domestica)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMODG00000015410 T318349_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.779 1.000
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.779 1.000
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.779 1.000
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.779 1.000
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.779 1.000
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.779 1.000
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.779 1.000
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.779 1.000
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.779 1.000
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.775 0.962
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.775 0.962
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.775 0.962
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.775 0.962
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.775 0.962
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.775 0.962
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.773 0.949
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.773 0.949
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.773 0.949
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.773 0.949
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.768 0.962
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.768 0.962
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.768 0.962
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.764 0.923
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.764 0.923
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.762 0.846
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.762 0.846
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.762 0.846
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.762 0.846
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.762 0.846
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.762 0.846
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.762 0.846
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.762 0.846
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.762 0.846
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.762 0.846
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.762 0.846
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.760 0.859
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.757 0.808
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.756 0.821
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.755 0.808
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.751 0.808
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.751 0.808
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.751 0.808
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.751 0.808
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.751 0.808
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.742 0.833
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.729 0.679
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.704 0.654
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.704 0.654
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.704 0.654
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.704 0.654
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.704 0.654
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.704 0.654
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.684 0.615
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.651 0.410
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.651 0.410
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.651 0.410
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.651 0.410
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.651 0.410
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000019237 RFX 185 262

Links

Other RFX family TFs
Other Monodelphis domestica TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU02307 Neurospora crassa NCU02307 D 0.000
OCS_02179 Ophiocordyceps sinensis OCS_02179 I 0.000
SBOR_8128 Sclerotinia borealis SBOR_8128 I 0.000
SAPIO_CDS3835 Scedosporium apiospermum SAPIO_CDS3835 I 0.000
S40288_04125 Stachybotrys chartarum S40288_04125 I 0.000
S40285_04496 Stachybotrys chlorohalonata S40285_04496 I 0.000
PV09_03558 Verruconis gallopava PV09_03558 I 0.000
PV07_04845 Cladophialophora immunda PV07_04845 I 0.000
PODANS_5_9700 Podospora anserina PODANS_5_9700 I 0.000
PMAA_046250 Talaromyces marneffei PMAA_046250 I 0.000
PFICI_14476 Pestalotiopsis fici PFICI_14476 I 0.000
THITE_2050890 Thielavia terrestris THITE_2050890 I 0.000
NEUTE1DRAFT_124026 Neurospora tetrasperma NEUTE1DRAFT_124026 I 0.000
NechaG93341 Fusarium solani NechaG93341 I 0.000
MYCTH_2308823 Myceliophthora thermophila MYCTH_2308823 I 0.000
MYCTH_2307450 Myceliophthora thermophila MYCTH_2307450 I 0.000
Mycgr3G109947 Zymoseptoria tritici Mycgr3G109947 I 0.000
MYCFIDRAFT_204155 Pseudocercospora fijiensis MYCFIDRAFT_204155 I 0.000
MGU_01761 Metarhizium guizhouense MGU_01761 I 0.000
VHEMI08584 Torrubiella hemipterigena VHEMI08584 I 0.000
PMAA_046250 Penicillium marneffei PMAA_046250 I 0.000
estExt_fgenesh1_pg.C_60724 Cryphonectria parasitica estExt_fgenesh1_pg.C_60724 I 0.000
e_gw1.8.145.1 Cryphonectria parasitica e_gw1.8.145.1 I 0.000
fgenesh1_pm.sca_12_chr5_2_0000158 Nectria haematococca fgenesh1_pm.sca_12_chr5_2_0000158 I 0.000
estExt_Genewise1Plus.C_13865 Mycosphaerella fijiensis estExt_Genewise1Plus.C_13865 I 0.000
estExt_fgenesh1_pg.C_chr_60424 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_60424 I 0.000
Z517_12550 Fonsecaea pedrosoi Z517_12550 I 0.000
X797_001395 Metarhizium robertsii X797_001395 I 0.000
SMAC_09353 Sordaria macrospora SMAC_09353 I 0.000
VDAG_09925 Verticillium dahliae VDAG_09925 I 0.000
UV8b_6210 Ustilaginoidea virens UV8b_6210 I 0.000
UCRPA7_5598 Togninia minima UCRPA7_5598 I 0.000
TSTA_035500 Talaromyces stipitatus TSTA_035500 I 0.000
TRIVIDRAFT_114564 Trichoderma virens TRIVIDRAFT_114564 I 0.000
TRIREDRAFT_51907 Trichoderma reesei TRIREDRAFT_51907 I 0.000
TRIATDRAFT_37495 Trichoderma atroviride TRIATDRAFT_37495 I 0.000
MBR_04909 Metarhizium brunneum MBR_04909 I 0.000
ACLA_003790 Aspergillus clavatus CADACLAG00000098 I 0.000
Cob_01903 Colletotrichum orbiculare Cob_01903 I 0.000
CMQ_3768 Grosmannia clavigera CMQ_3768 I 0.000
CHGG_09596 Chaetomium globosum CHGG_09596 I 0.000
CHGG_08641 Chaetomium globosum CHGG_08641 I 0.000
CH063_10224 Colletotrichum higginsianum CH063_10224 I 0.000
CGGC5_10678 Colletotrichum gloeosporioides CGGC5_10678 I 0.000
CFIO01_08325 Colletotrichum fioriniae CFIO01_08325 I 0.000
CCM_05966 Cordyceps militaris CCM_05966 I 0.000
CCM_00925 Cordyceps militaris CCM_00925 I 0.000
CSUB01_08919 Colletotrichum sublineola CSUB01_08919 I 0.000
BGHDH14_bgh01891 Blumeria graminis BGHDH14_bgh01891 I 0.000
Bcin02g05460 Botrytis cinerea Bcin02g05460 I 0.000
BBA_09836 Beauveria bassiana BBA_09836 I 0.000
BBA_08203 Beauveria bassiana BBA_08203 I 0.000
BBA_00740 Beauveria bassiana BBA_00740 I 0.000
BAUCODRAFT_70890 Baudoinia compniacensis BAUCODRAFT_70890 I 0.000
AOL_s00110g185 Arthrobotrys oligospora AOL_s00110g185 I 0.000
ACRE_009170 Acremonium chrysogenum ACRE_009170 I 0.000
GGTG_06963 Gaeumannomyces graminis GGTG_06963 I 0.000
MAPG_09501 Magnaporthe poae MAPG_09501 I 0.000
MANI_011716 Metarhizium anisopliae MANI_011716 I 0.000
M7I_1858 Glarea lozoyensis M7I_1858 I 0.000
HMPREF1624_04642 Sporothrix schenckii HMPREF1624_04642 I 0.000
H072_165 Dactylellina haptotyla H072_165 I 0.000
GMDG_06850 Pseudogymnoascus destructans GMDG_06850 I 0.000
GMDG_05510 Pseudogymnoascus destructans GMDG_05510 I 0.000
GLRG_09279 Colletotrichum graminicola GLRG_09279 I 0.000
A1O3_04629 Capronia epimyces A1O3_04629 I 0.000
GGTG_02446 Gaeumannomyces graminis GGTG_02446 I 0.000
FPSE_08858 Fusarium pseudograminearum FPSE_08858 I 0.000
FGRRES_17514 Fusarium graminearum FGRRES_17514 I 0.000
FFUJ_08392 Fusarium fujikuroi FFUJ_08392 I 0.000
F503_03706 Ophiostoma piceae uamh F503_03706 I 0.000
DRE_04134 Drechslerella stenobrocha DRE_04134 I 0.000
DOTSEDRAFT_54819 Dothistroma septosporum DOTSEDRAFT_54819 I 0.000
CTHT_0045110 Chaetomium thermophilum CTHT_0045110 I 0.000