LALA0_S03e09428g (Lachancea lanzarotensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 LALA0_S03e09428g T318667_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.727 0.747
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.727 0.747
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.727 0.747
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.727 0.747
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.727 0.747
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CEP61723 RFX 377 455

Links

Other RFX family TFs
Other Lachancea lanzarotensis TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SRM1 Arabidopsis thaliana AT5G08520 D 0.000
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.000
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.000
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.000
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.000
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.000
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.000
mgf009460m Mimulus guttatus mgf009460m I 0.000
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.000
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.000
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.000
Pm017050 Prunus mume Pm017050 I 0.000
Pm006046 Prunus mume Pm006046 I 0.000
Cla020348 Citrullus lanatus Cla020348 I 0.000
Cla009230 Citrullus lanatus Cla009230 I 0.000
Ca_19000 Cicer arietinum Ca_19000 I 0.000
Ca_05454 Cicer arietinum Ca_05454 I 0.000
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.000
PK13672.1 Cannabis sativa PK13672.1 I 0.000
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.000
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.000
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.000
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.000
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.000
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.000
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.000
MDP0000289018 Malus domestica MDP0000289018 I 0.000
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.000
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.000
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.000
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.000
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.000
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.000
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.000
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.000
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.000
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.000
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.000
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.000
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.000
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.000
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.000
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.000
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.000
TCM_007672 Theobroma cacao TCM_007672 I 0.000
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.000
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.000
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.000
Bra028654 Brassica rapa Bra028654 I 0.000
Bra009346 Brassica rapa Bra009346 I 0.000
Bo9g174380 Brassica oleracea Bo9g174380 I 0.000
Bo3g004970 Brassica oleracea Bo3g004970 I 0.000
Bo2g009130 Brassica oleracea Bo2g009130 I 0.000
TCM_041160 Theobroma cacao TCM_041160 I 0.000
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.000
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.000
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.000
OS04G0676700 Oryza sativa OS04G0676700 N 0.000
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.000
BGIOSGA014092 Oryza indica BGIOSGA014092 N 0.000
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.000
Si022762m.g Setaria italica Si022762m.g N 0.000
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.000
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.000
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.000
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.000
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.000
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.000
OBART04G29570 Oryza barthii OBART04G29570 N 0.000
ORUFI04G31270 Oryza rufipogon ORUFI04G31270 N 0.000
cassava42566.valid.m1 Manihot esculenta cassava42566.valid.m1 N 0.000
ORGLA04G0258700 Oryza glaberrima ORGLA04G0258700 N 0.000
OPUNC04G27130 Oryza punctata OPUNC04G27130 N 0.000
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.000
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.000
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.000
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.000
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.000
Ciclev10029205m.g Citrus clementina Ciclev10029205m.g N 0.000
ONIVA04G28100 Oryza nivara ONIVA04G28100 N 0.000
OMERI04G25000 Oryza meridionalis OMERI04G25000 N 0.000
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.000
OB04G36550 Oryza brachyantha OB04G36550 N 0.000