CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MGYG_03742 *(Microsporum gypseum)* RFX
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02257 (RFX_DNA_binding)	IPR003150	MGYG_03742	T318699_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RFX1 M00066_2.00	Saccharomyces cerevisiae	NSGTTGCYAN	NTRGCAACSN	PBM Badis et al.(2008) RFX1_4537	0.674	0.468
RFX1 M07494_2.00	Saccharomyces cerevisiae	BGTTRCYA	TRGYAACV	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0365.1	0.674	0.468
RFX1 M08600_2.00	Saccharomyces cerevisiae	CGTYRBYAYRGYWACM	KGTWRCYRTRVYRACG	Misc DeBoer et al.(2011) YLR176C_1478	0.674	0.468
RFX1 M08601_2.00	Saccharomyces cerevisiae	BGTTRCYA	TRGYAACV	Misc DeBoer et al.(2011) YLR176C_496	0.674	0.468
RFX1 M11251_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$RFX1_02	0.674	0.468
daf-19 M00709_2.00	Caenorhabditis elegans	SGTTRCTADG	CHTAGYAACS	PBM Narasimhan et al.(2015) pTH10021	0.666	0.455
XP_002157607.1 M02456_2.00	Hydra magnipapillata	GTHDYYDNVN	NBNHRRHDAC	PBM Weirauch et al.(2014) pTH9199	0.656	0.403
GB41876 M02453_2.00	Apis mellifera	GTHDCYANVN	NBNTRGHDAC	PBM Weirauch et al.(2014) pTH9226	0.655	0.403
RFX2 M02449_2.00	Homo sapiens	BGTHRYYADG	CHTRRYDACV	PBM Weirauch et al.(2014) pTH9194	0.655	0.390
RFX2 M02450_2.00	Ornithorhynchus anatinus	NGTHRYYANV	BNTRRYDACN	PBM Weirauch et al.(2014) pTH9269	0.655	0.390
Rfx3 M00188_2.00	Mus musculus	SNTRRHDACN	NGTHDYYANS	PBM Badis et al.(2009) Rfx3_3961	0.653	0.390
Rfx3 M03463_2.00	Mus musculus	SGTTRCCATGGYAACS	SGTTRCCATGGYAACS	SELEX Jolma et al.(2013) Rfx3_1	0.653	0.390
Rfx3 M09368_2.00	Mus musculus	BBGTTGCCATGGNRAC	GTYNCCATGGCAACVV	Misc Kulakovskiy et al.(2013) RFX3_MOUSE.H11MO.0.C	0.653	0.390
G4VLF2_SCHMA M02452_2.00	Schistosoma mansoni	GTTGCTAD	HTAGCAAC	PBM Weirauch et al.(2014) pTH8587	0.653	0.390
Sjc_0102030 M02455_2.00	Schistosoma japonicum	GTTRCYANG	CNTRGYAAC	PBM Weirauch et al.(2014) pTH9285	0.653	0.390
RFX2 M03454_2.00	Homo sapiens	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) RFX2_1	0.653	0.390
RFX2 M03455_2.00	Homo sapiens	SGTTGCTARGCAACS	SGTTGCYTAGCAACS	SELEX Jolma et al.(2013) RFX2_2	0.653	0.390
Rfx2 M03461_2.00	Mus musculus	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) Rfx2_1	0.653	0.390
Rfx2 M03462_2.00	Mus musculus	SGTTGCTARGCAACV	BGTTGCYTAGCAACS	SELEX Jolma et al.(2013) Rfx2_2	0.653	0.390
RFX2 M05719_2.00	Homo sapiens	NGTWDYYATRRHWACN	NGTWDYYATRRHWACN	SELEX Yin et al.(2017) RFX2_eDBD_HT-SELEX	0.653	0.390
Rfx2 M05888_2.00	Mus musculus	NGTTRCYATGGHDAY	RTHDCCATRGYAACN	SMiLE-seq Isakova et al.(2017) RFX2	0.653	0.390
RFX2 M09362_2.00	Homo sapiens	YNGTTGCCATGGVRACVV	BBGTYBCCATGGCAACNR	Misc Kulakovskiy et al.(2013) RFX2_HUMAN.H11MO.0.A	0.653	0.390
Rfx2 M09366_2.00	Mus musculus	NBYBGTYNCCMTGGCAACNSSS	SSSNGTTGCCAKGGNRACVRVN	Misc Kulakovskiy et al.(2013) RFX2_MOUSE.H11MO.0.A	0.653	0.390
RFX2 M09628_2.00	Homo sapiens	BGTTKCCATGGMAAC	GTTKCCATGGMAACV	Misc Heinz et al.(2010) LoVo-RFX2_GSE49402	0.653	0.390
RFX2 M05720_2.00	Homo sapiens	BGTTRCCATGRYAACV	BGTTRYCATGGYAACV	SELEX Yin et al.(2017) RFX2_eDBD_Methyl-HT-SELEX	0.653	0.390
RFX1 M02447_2.00	Anolis carolinensis	GTHRCYANGN	NCNTRGYDAC	PBM Weirauch et al.(2014) pTH9223	0.653	0.403
RFX1 M02451_2.00	Tetraodon nigroviridis	GTHDYYANGN	NCNTRRHDAC	PBM Weirauch et al.(2014) pTH9385	0.653	0.403
RFX1 M05723_2.00	Homo sapiens	BGTTRYCATGRYAACV	BGTTRYCATGRYAACV	SELEX Yin et al.(2017) RFX1_eDBD_HT-SELEX	0.653	0.403
Rfx1 M08162_2.00	Mus musculus	GTTGCYADGGNRAC	GTYNCCHTRGCAAC	ChIP-seq Mathelier et al.(2014) MA0509.1	0.653	0.403
RFX1 M09363_2.00	Homo sapiens	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_HUMAN.H11MO.0.B	0.653	0.403
Rfx1 M09367_2.00	Mus musculus	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_MOUSE.H11MO.0.A	0.653	0.403
RFX1 M11245_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EFC_Q6	0.653	0.403
RFX1 M11246_2.00	Homo sapiens	HNGTTRCYWVGYDMYNN	NNRKHRCBWRGYAACND	Transfac Matys et al.(2006) V$RFX1_01	0.653	0.403
RFX1 M11247_2.00	Homo sapiens	HNGTTRCYWBVGYDMYNN	NNRKHRCBVWRGYAACND	Transfac Matys et al.(2006) V$RFX1_02	0.653	0.403
RFX1 M11248_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX1_Q6	0.653	0.403
RFX1 M05724_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX1_eDBD_Methyl-HT-SELEX	0.653	0.403
Rfx M03959_2.00	Drosophila melanogaster	NGTHRCYATRGYDACN	NGTHRCYATRGYDACN	SELEX Nitta et al.(2015) Rfx_1	0.652	0.390
Rfx M03960_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_2	0.652	0.390
Rfx M03961_2.00	Drosophila melanogaster	BGTWRCCATGGYWACV	BGTWRCCATGGYWACV	SELEX Nitta et al.(2015) Rfx_3	0.652	0.390
Rfx M03962_2.00	Drosophila melanogaster	GTTRCYAWTRGYAAC	GTTRCYAWTRGYAAC	SELEX Nitta et al.(2015) Rfx_4	0.652	0.390
Rfx M03963_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_5	0.652	0.390
RFX3 M03452_2.00	Homo sapiens	NGTTRCCATGGHAACV	BGTTDCCATGGYAACN	SELEX Jolma et al.(2013) RFX3_1	0.651	0.390
RFX3 M03453_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Jolma et al.(2013) RFX3_2	0.651	0.390
RFX3 M02750_2.00	Homo sapiens	GTTRYYATGG	CCATRRYAAC	SELEX Jolma et al.(2010) RFX3_dimer	0.651	0.390
RFX3 M05715_2.00	Homo sapiens	NGTTRYYATRRYAACN	NGTTRYYATRRYAACN	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_1	0.651	0.390
RFX3 M05716_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_2	0.651	0.390
RFX3 M09361_2.00	Homo sapiens	BGTTRCCATGGYRN	NYRCCATGGYAACV	Misc Kulakovskiy et al.(2013) RFX3_HUMAN.H11MO.0.B	0.651	0.390
RFX3 M09627_2.00	Homo sapiens	BNGTTGCCATGGCAAC	GTTGCCATGGCAACNV	Misc Heinz et al.(2010) K562-RFX3_SRA012198	0.651	0.390
RFX3 M05717_2.00	Homo sapiens	BGTTRYYATRRYAACV	BGTTRYYATRRYAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_1	0.651	0.390
RFX3 M05718_2.00	Homo sapiens	BGTTGCTARGCAACV	BGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_2	0.651	0.390
For this family, TFs with SR scores > 0.650* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EFR00737	RFX	277	353	QVFAMIWLRENCQRGDGSVRRDRVYCCYAEKCGNDRVSVLNPASFGKLVRIIFPNVQTRRLGVRGESKYHYVDLSLI

Links
Other RFX family TFs
Other *Microsporum gypseum* TFs

549 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
LDEC005984	Leptinotarsa decemlineata	LDEC005984	N	0.000
L798_13970	Zootermopsis nevadensis	L798_13970	N	0.000
MCINX001754	Melitaea cinxia	MCINX001754	N	0.000
NV13471	Nasonia vitripennis	NV13471	N	0.000
PHUM221070	Pediculus humanus	PHUM221070	N	0.000
SINV11338	Solenopsis invicta	SINV11338	N	0.000
TC003707	Tribolium castaneum	TC003707	N	0.000
Cflo_05366--XP_001120155.1_APIME	Camponotus floridanus	Cflo_05366--XP_001120155.1_APIME	N	0.000
CLEC004985	Cimex lectularius	CLEC004985	N	0.000
HHAL008764-PA	Halyomorpha halys	HHAL008764-PA	N	0.000
LCUP004423	Lucilia cuprina	LCUP004423	N	0.000
KGM_06311	Danaus plexippus	KGM_06311	N	0.000
AALB009100	Anopheles albimanus	AALB009100	N	0.000
AATE013995	Anopheles atroparvus	AATE013995	N	0.000
ACOM037336	Anopheles coluzzii	ACOM037336	N	0.000
AMEC003748	Anopheles melas	AMEC003748	N	0.000
AMEM008468	Anopheles merus	AMEM008468	N	0.000
ASIS014267	Anopheles sinensis	ASIS014267	N	0.000
ASTEI03270	Anopheles stephensi	ASTEI03270	N	0.000
MDOA010621	Musca domestica	MDOA010621	N	0.000
PPAI000190	Phlebotomus papatasi	PPAI000190	N	0.000
GG17407	Drosophila erecta	FBgn0109633	N	0.000
AAEL000826	Aedes aegypti	AAEL000826	N	0.000
ACEP12019	Atta cephalotes	ACEP12019	N	0.000
ACYPI53104	Acyrthosiphon pisum	ACYPI53104	N	0.000
ADAC004556	Anopheles darlingi	ADAC004556	N	0.000
BGIBMGA002168	Bombyx mori	BGIBMGA002168	N	0.000
CPIJ019621	Culex quinquefasciatus	CPIJ019621	N	0.000
DAPPUDRAFT_196639	Daphnia pulex	DAPPUDRAFT_196639	N	0.000
CG11966	Drosophila melanogaster	FBgn0037645	N	0.000
GA11300	Drosophila pseudoobscura	FBgn0071354	N	0.000
GF17275	Drosophila ananassae	FBgn0094293	N	0.000
CpipJ_CPIJ019621	Culex pipiens	CpipJ_CPIJ019621	N	0.000
GH18583	Drosophila grimshawi	FBgn0126050	N	0.000
GI24513	Drosophila mojavensis	FBgn0147235	N	0.000
GL21645	Drosophila persimilis	FBgn0159238	N	0.000
GM26297	Drosophila sechellia	FBgn0181151	N	0.000
GJ22686	Drosophila virilis	FBgn0209790	N	0.000
GK11210	Drosophila willistoni	FBgn0213221	N	0.000
GE24811	Drosophila yakuba	FBgn0241912	N	0.000
GB48806	Apis mellifera	GB48806	N	0.000
HMEL015339	Heliconius melpomene	HMEL015339	N	0.000

MGYG_03742 (Microsporum gypseum) RFX

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

549 Related TFs

MGYG_03742 **(Microsporum gypseum)
RFX**