CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

NERG_01713 *(Nematocida sp)* RFX
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02257 (RFX_DNA_binding)	IPR003150	NERG_01713	T318719_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Sjc_0102030 M02455_2.00	Schistosoma japonicum	GTTRCYANG	CNTRGYAAC	PBM Weirauch et al.(2014) pTH9285	0.667	0.443
RFX1 M02447_2.00	Anolis carolinensis	GTHRCYANGN	NCNTRGYDAC	PBM Weirauch et al.(2014) pTH9223	0.666	0.443
RFX1 M02451_2.00	Tetraodon nigroviridis	GTHDYYANGN	NCNTRRHDAC	PBM Weirauch et al.(2014) pTH9385	0.666	0.443
RFX1 M05723_2.00	Homo sapiens	BGTTRYCATGRYAACV	BGTTRYCATGRYAACV	SELEX Yin et al.(2017) RFX1_eDBD_HT-SELEX	0.666	0.443
Rfx1 M08162_2.00	Mus musculus	GTTGCYADGGNRAC	GTYNCCHTRGCAAC	ChIP-seq Mathelier et al.(2014) MA0509.1	0.666	0.443
RFX1 M09363_2.00	Homo sapiens	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_HUMAN.H11MO.0.B	0.666	0.443
Rfx1 M09367_2.00	Mus musculus	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_MOUSE.H11MO.0.A	0.666	0.443
RFX1 M11245_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EFC_Q6	0.666	0.443
RFX1 M11246_2.00	Homo sapiens	HNGTTRCYWVGYDMYNN	NNRKHRCBWRGYAACND	Transfac Matys et al.(2006) V$RFX1_01	0.666	0.443
RFX1 M11247_2.00	Homo sapiens	HNGTTRCYWBVGYDMYNN	NNRKHRCBVWRGYAACND	Transfac Matys et al.(2006) V$RFX1_02	0.666	0.443
RFX1 M11248_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX1_Q6	0.666	0.443
RFX1 M05724_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX1_eDBD_Methyl-HT-SELEX	0.666	0.443
GB41876 M02453_2.00	Apis mellifera	GTHDCYANVN	NBNTRGHDAC	PBM Weirauch et al.(2014) pTH9226	0.666	0.456
G4VLF2_SCHMA M02452_2.00	Schistosoma mansoni	GTTGCTAD	HTAGCAAC	PBM Weirauch et al.(2014) pTH8587	0.666	0.443
Rfx M03959_2.00	Drosophila melanogaster	NGTHRCYATRGYDACN	NGTHRCYATRGYDACN	SELEX Nitta et al.(2015) Rfx_1	0.665	0.443
Rfx M03960_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_2	0.665	0.443
Rfx M03961_2.00	Drosophila melanogaster	BGTWRCCATGGYWACV	BGTWRCCATGGYWACV	SELEX Nitta et al.(2015) Rfx_3	0.665	0.443
Rfx M03962_2.00	Drosophila melanogaster	GTTRCYAWTRGYAAC	GTTRCYAWTRGYAAC	SELEX Nitta et al.(2015) Rfx_4	0.665	0.443
Rfx M03963_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_5	0.665	0.443
XP_002157607.1 M02456_2.00	Hydra magnipapillata	GTHDYYDNVN	NBNHRRHDAC	PBM Weirauch et al.(2014) pTH9199	0.664	0.430
Rfx3 M00188_2.00	Mus musculus	SNTRRHDACN	NGTHDYYANS	PBM Badis et al.(2009) Rfx3_3961	0.664	0.443
Rfx3 M03463_2.00	Mus musculus	SGTTRCCATGGYAACS	SGTTRCCATGGYAACS	SELEX Jolma et al.(2013) Rfx3_1	0.664	0.443
Rfx3 M09368_2.00	Mus musculus	BBGTTGCCATGGNRAC	GTYNCCATGGCAACVV	Misc Kulakovskiy et al.(2013) RFX3_MOUSE.H11MO.0.C	0.664	0.443
Rfx6 M09365_2.00	Mus musculus	BDGTWKCYNDG	CHNRGMAACHV	Misc Kulakovskiy et al.(2013) RFX6_MOUSE.H11MO.0.C	0.664	0.443
RFX2 M02449_2.00	Homo sapiens	BGTHRYYADG	CHTRRYDACV	PBM Weirauch et al.(2014) pTH9194	0.662	0.430
RFX2 M02450_2.00	Ornithorhynchus anatinus	NGTHRYYANV	BNTRRYDACN	PBM Weirauch et al.(2014) pTH9269	0.662	0.430
RFX3 M03452_2.00	Homo sapiens	NGTTRCCATGGHAACV	BGTTDCCATGGYAACN	SELEX Jolma et al.(2013) RFX3_1	0.661	0.443
RFX3 M03453_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Jolma et al.(2013) RFX3_2	0.661	0.443
RFX3 M02750_2.00	Homo sapiens	GTTRYYATGG	CCATRRYAAC	SELEX Jolma et al.(2010) RFX3_dimer	0.661	0.443
RFX3 M05715_2.00	Homo sapiens	NGTTRYYATRRYAACN	NGTTRYYATRRYAACN	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_1	0.661	0.443
RFX3 M05716_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_2	0.661	0.443
RFX3 M09361_2.00	Homo sapiens	BGTTRCCATGGYRN	NYRCCATGGYAACV	Misc Kulakovskiy et al.(2013) RFX3_HUMAN.H11MO.0.B	0.661	0.443
RFX3 M09627_2.00	Homo sapiens	BNGTTGCCATGGCAAC	GTTGCCATGGCAACNV	Misc Heinz et al.(2010) K562-RFX3_SRA012198	0.661	0.443
RFX3 M05717_2.00	Homo sapiens	BGTTRYYATRRYAACV	BGTTRYYATRRYAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_1	0.661	0.443
RFX3 M05718_2.00	Homo sapiens	BGTTGCTARGCAACV	BGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_2	0.661	0.443
Rfx2 M03461_2.00	Mus musculus	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) Rfx2_1	0.661	0.443
Rfx2 M03462_2.00	Mus musculus	SGTTGCTARGCAACV	BGTTGCYTAGCAACS	SELEX Jolma et al.(2013) Rfx2_2	0.661	0.443
Rfx2 M05888_2.00	Mus musculus	NGTTRCYATGGHDAY	RTHDCCATRGYAACN	SMiLE-seq Isakova et al.(2017) RFX2	0.661	0.443
Rfx2 M09366_2.00	Mus musculus	NBYBGTYNCCMTGGCAACNSSS	SSSNGTTGCCAKGGNRACVRVN	Misc Kulakovskiy et al.(2013) RFX2_MOUSE.H11MO.0.A	0.661	0.443
daf-19 M00709_2.00	Caenorhabditis elegans	SGTTRCTADG	CHTAGYAACS	PBM Narasimhan et al.(2015) pTH10021	0.661	0.443
RFX4 M02448_2.00	Cavia porcellus	GTHDYYNNGN	NCNNRRHDAC	PBM Weirauch et al.(2014) pTH9249	0.660	0.430
Rfx4 M00186_2.00	Mus musculus	GTHDYYNNSN	NSNNRRHDAC	PBM Badis et al.(2009) Rfx4_3761	0.660	0.430
RFX4 M03456_2.00	Homo sapiens	NGTWRYCATRGHWACN	NGTWDCYATGRYWACN	SELEX Jolma et al.(2013) RFX4_1	0.660	0.430
RFX4 M03457_2.00	Homo sapiens	NGTTGCYRRGCAACS	SGTTGCYYRGCAACN	SELEX Jolma et al.(2013) RFX4_2	0.660	0.430
RFX4 M05721_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX4_eDBD_HT-SELEX	0.660	0.430
RFX4 M05722_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX4_eDBD_Methyl-HT-SELEX	0.660	0.430
RFX2 M03454_2.00	Homo sapiens	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) RFX2_1	0.659	0.430
RFX2 M03455_2.00	Homo sapiens	SGTTGCTARGCAACS	SGTTGCYTAGCAACS	SELEX Jolma et al.(2013) RFX2_2	0.659	0.430
RFX2 M05719_2.00	Homo sapiens	NGTWDYYATRRHWACN	NGTWDYYATRRHWACN	SELEX Yin et al.(2017) RFX2_eDBD_HT-SELEX	0.659	0.430
RFX2 M09362_2.00	Homo sapiens	YNGTTGCCATGGVRACVV	BBGTYBCCATGGCAACNR	Misc Kulakovskiy et al.(2013) RFX2_HUMAN.H11MO.0.A	0.659	0.430
RFX2 M09628_2.00	Homo sapiens	BGTTKCCATGGMAAC	GTTKCCATGGMAACV	Misc Heinz et al.(2010) LoVo-RFX2_GSE49402	0.659	0.430
RFX2 M05720_2.00	Homo sapiens	BGTTRCCATGRYAACV	BGTTRYCATGGYAACV	SELEX Yin et al.(2017) RFX2_eDBD_Methyl-HT-SELEX	0.659	0.430
PHUM046580 M02454_2.00	Pediculus humanus	NGTHDCYANV	BNTRGHDACN	PBM Weirauch et al.(2014) pTH9278	0.658	0.430
For this family, TFs with SR scores > 0.650* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EHY65267	RFX	2	80	NQPITNWLNLNYAPCKDNSIPRCIIYQHYCNDFKEKGIEPLNTAMFGKVIKMAFPFIRSRRLGNRGNSKYHYFGVAVKG

Links
Other RFX family TFs
Other *Nematocida sp* TFs

572 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AOL_s00076g415	Arthrobotrys oligospora	AOL_s00076g415	I	0.000
ARB_05109	Arthroderma benhamiae	ARB_05109	I	0.000
MGYG_08173	Microsporum gypseum	MGYG_08173	I	0.000
H105_05509	Trichophyton soudanense	H105_05509	I	0.000
TRV_07860	Trichophyton verrucosum	TRV_07860	I	0.000
TEQG_02389	Trichophyton equinum	TEQG_02389	I	0.000
DRE_06459	Drechslerella stenobrocha	DRE_06459	I	0.000
H102_05466	Trichophyton rubrum	H102_05466	I	0.000
H101_02474	Trichophyton interdigitale	H101_02474	I	0.000
GSTUM_00012254001	Tuber melanosporum	GSTUM_00012254001	I	0.000
H072_5429	Dactylellina haptotyla	H072_5429	I	0.000
SETTUDRAFT_181417	Setosphaeria turcica	SETTUDRAFT_181417	N	0.000
MYCFIDRAFT_95483	Pseudocercospora fijiensis	MYCFIDRAFT_95483	N	0.000
Mycgr3G20893	Zymoseptoria tritici	Mycgr3G20893	N	0.000
PTRG_00830	Pyrenophora triticirepentis	PTRG_00830	N	0.000
PV09_02303	Verruconis gallopava	PV09_02303	N	0.000
SEPMUDRAFT_145995	Sphaerulina musiva	SEPMUDRAFT_145995	N	0.000
LEMA_P051420.1	Leptosphaeria maculans	LEMA_P051420.1	N	0.000
UCRNP2_1954	Neofusicoccum parvum	UCRNP2_1954	N	0.000
V499_09210	Pseudogymnoascus pannorum	V499_09210	N	0.000
W97_00606	Coniosporium apollinis	W97_00606	N	0.000
estExt_Genewise1.C_12121	Mycosphaerella fijiensis	estExt_Genewise1.C_12121	N	0.000
estExt_Genewise1.C_60195	Cochliobolus heterostrophus C5	estExt_Genewise1.C_60195	N	0.000
gw1.1.2094.1	Mycosphaerella graminicola	gw1.1.2094.1	N	0.000
MPH_03457	Macrophomina phaseolina	MPH_03457	N	0.000
M438DRAFT_299670	Aureobasidium pullulans	M438DRAFT_299670	N	0.000
M437DRAFT_59053	Aureobasidium melanogenum	M437DRAFT_59053	N	0.000
SNOG_07131	Stagonospora nodorum	SNOG_07131	N	0.000
GMDG_05434	Pseudogymnoascus destructans	GMDG_05434	N	0.000
EPUS_02316	Endocarpon pusillum	EPUS_02316	N	0.000
DOTSEDRAFT_67989	Dothistroma septosporum	DOTSEDRAFT_67989	N	0.000
COCVIDRAFT_104413	Bipolaris victoriae	COCVIDRAFT_104413	N	0.000
COCMIDRAFT_32511	Bipolaris oryzae	COCMIDRAFT_32511	N	0.000
COCCADRAFT_22830	Bipolaris zeicola	COCCADRAFT_22830	N	0.000
COCC4DRAFT_69191	Bipolaris maydis	COCC4DRAFT_69191	N	0.000
BAUCODRAFT_29699	Baudoinia compniacensis	BAUCODRAFT_29699	N	0.000
AUEXF2481DRAFT_112381	Aureobasidium subglaciale	AUEXF2481DRAFT_112381	N	0.000
A1O3_02831	Capronia epimyces	A1O3_02831	N	0.000

NERG_01713 (Nematocida sp) RFX

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

572 Related TFs

NERG_01713 **(Nematocida sp)
RFX**