PILCRDRAFT_94503 (Piloderma croceum)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 PILCRDRAFT_94503 T318753_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.651 0.430
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.651 0.430
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.651 0.430
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.651 0.430
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.651 0.430
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIM90808 RFX 211 289

Links

Other RFX family TFs
Other Piloderma croceum TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000741 Ricinus communis 29814.m000741 I 0.000
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.000
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.000
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.000
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.000
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.000
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.000
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.000
29900.m001628 Ricinus communis 29900.m001628 I 0.000
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.000
Cla002288 Citrullus lanatus Cla002288 I 0.000
Ca_19877 Cicer arietinum Ca_19877 I 0.000
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.000
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.000
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.000
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.000
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.000
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.000
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.000
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.000