Myotis_brandtii_RFX5_10008035 (Myotis brandtii)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Myotis_brandtii_RFX5_10008035 T319004_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.782 0.975
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.782 0.975
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.782 0.975
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.782 0.975
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.782 0.975
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.782 0.975
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.782 0.975
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.782 0.975
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.782 0.975
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.782 0.975
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.782 0.975
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.782 0.975
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.782 0.975
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.782 0.975
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.782 0.975
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.705 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.705 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.705 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.705 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_RFX5_10008035 RFX 124 203

Links

Other RFX family TFs
Other Myotis brandtii TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.000
SPL6 Arabidopsis thaliana AT1G69170 I 0.000
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.000
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.000
Bo2g062840 Brassica oleracea Bo2g062840 I 0.000
Bra038324 Brassica rapa Bra038324 I 0.000
F775_02791 Aegilops tauschii F775_02791 I 0.000
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.000
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.000
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.000
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.000
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.000
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.000
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.000
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.000
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.000
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.000
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.000
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.000
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.000
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.000
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.000
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.000
OB04G27960 Oryza brachyantha OB04G27960 I 0.000
OBART04G20940 Oryza barthii OBART04G20940 I 0.000
OBART07G15570 Oryza barthii OBART07G15570 I 0.000
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.000
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.000
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.000
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.000
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.000
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.000
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.000
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.000
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.000
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.000
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.000
SPL7 Oryza sativa OS04G0551500 I 0.000
SPL19 Oryza sativa OS11G0496600 I 0.000
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.000
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.000
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.000
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.000
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.000
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.000
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.000
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.000
Si010262m.g Setaria italica Si010262m.g I 0.000
Si013151m.g Setaria italica Si013151m.g I 0.000
Si032170m.g Setaria italica Si032170m.g I 0.000
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.000
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.000
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.000
TCM_011483 Theobroma cacao TCM_011483 I 0.000
TCM_014330 Theobroma cacao TCM_014330 I 0.000
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.000
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.000
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.000
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.000
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.000
Ca_19449 Cicer arietinum Ca_19449 I 0.000
Ca_24655 Cicer arietinum Ca_24655 I 0.000
Cla004156 Citrullus lanatus Cla004156 I 0.000
Cla018827 Citrullus lanatus Cla018827 I 0.000
Cla019331 Citrullus lanatus Cla019331 I 0.000
Cla021411 Citrullus lanatus Cla021411 I 0.000
Pm025028 Prunus mume Pm025028 I 0.000
Pm030597 Prunus mume Pm030597 I 0.000
30138.m003942 Ricinus communis 30138.m003942 I 0.000
30174.m009082 Ricinus communis 30174.m009082 I 0.000
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.000
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.000
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.000
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.000
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.000
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.000
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.000
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.000
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.000
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.000
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.000
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.000
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.000
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.000
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.000
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.000
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.000
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.000
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.000
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.000
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.000
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.000
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.000
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.000
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.000
MDP0000119458 Malus domestica MDP0000119458 I 0.000
MDP0000146640 Malus domestica MDP0000146640 I 0.000
MDP0000171877 Malus domestica MDP0000171877 I 0.000
MDP0000193702 Malus domestica MDP0000193702 I 0.000
MDP0000246046 Malus domestica MDP0000246046 I 0.000
MDP0000589558 Malus domestica MDP0000589558 I 0.000
MDP0000778465 Malus domestica MDP0000778465 I 0.000
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.000
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.000
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.000
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.000
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.000
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.000
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.000
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.000
PK03565.1 Cannabis sativa PK03565.1 I 0.000
PK17790.1 Cannabis sativa PK17790.1 I 0.000
Bo6g108620 Brassica oleracea Bo6g108620 N 0.000
Bra004363 Brassica rapa Bra004363 N 0.000
OPUNC07G14360 Oryza punctata OPUNC07G14360 N 0.000
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.000
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.000
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.000
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.000
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.000
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.000
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.000
MDP0000142582 Malus domestica MDP0000142582 N 0.000
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.000
PK14243.1 Cannabis sativa PK14243.1 N 0.000