Sjc_0019090 (Schistosoma japonicum)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Sjc_0019090 T319074_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.696 0.536
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.696 0.536
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.696 0.536
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.696 0.536
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.691 0.536
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.691 0.536
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.691 0.536
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.691 0.536
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.691 0.536
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.691 0.536
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.691 0.536
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.691 0.536
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.691 0.536
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.691 0.536
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.691 0.536
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.691 0.536
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.691 0.536
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.691 0.536
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.691 0.536
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000001788 RFX 718 786

Links

Other RFX family TFs
Other Schistosoma japonicum TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU01238 Neurospora crassa NCU01238 D 0.000
CIMG_06555 Coccidioides immitis CIMG_06555 I 0.000
MCYG_01846 Microsporum canis MCYG_01846 I 0.000
SNOG_11200 Stagonospora nodorum SNOG_11200 I 0.000
VDBG_07586 Verticillium albo atrum VDBG_07586 I 0.000
A1O1_02396 Capronia coronata A1O1_02396 I 0.000
A1O3_00648 Capronia epimyces A1O3_00648 I 0.000
A1O5_01000 Cladophialophora psammophila A1O5_01000 I 0.000
A1O7_04628 Cladophialophora yegresii A1O7_04628 I 0.000
A1O9_09248 Exophiala aquamarina A1O9_09248 I 0.000
ACRE_026770 Acremonium chrysogenum ACRE_026770 I 0.000
AGOS_AFL127C Ashbya gossypii AGOS_AFL127C I 0.000
AOL_s00007g450 Arthrobotrys oligospora AOL_s00007g450 I 0.000
ARB_06850 Arthroderma benhamiae ARB_06850 I 0.000
AUEXF2481DRAFT_73501 Aureobasidium subglaciale AUEXF2481DRAFT_73501 I 0.000
BAUCODRAFT_567336 Baudoinia compniacensis BAUCODRAFT_567336 I 0.000
BBA_06597 Beauveria bassiana BBA_06597 I 0.000
Bcin02g00190 Botrytis cinerea Bcin02g00190 I 0.000
BDDG_05039 Blastomyces dermatitidis BDDG_05039 I 0.000
BGHDH14_bgh06435 Blumeria graminis BGHDH14_bgh06435 I 0.000
BN7_4555 Wickerhamomyces ciferrii BN7_4555 I 0.000
ACLA_001740 Aspergillus clavatus CADACLAG00000030 I 0.000
CADAFLAG00010689 Aspergillus flavus CADAFLAG00010689 I 0.000
AFUA_5G03430 Aspergillus fumigatus CADAFUAG00002555 I 0.000
CADANGAG00008115 Aspergillus niger CADANGAG00008115 I 0.000
ANIA_08211 Aspergillus nidulans CADANIAG00004258 I 0.000
CADAORAG00009843 Aspergillus oryzae CADAORAG00009843 I 0.000
ATEG_08071 Aspergillus terreus CADATEAG00004027 I 0.000
NFIA_038680 Neosartorya fischeri CADNFIAG00003100 I 0.000
CC1G_01421 Coprinopsis cinerea CC1G_01421 I 0.000
CCM_07966 Cordyceps militaris CCM_07966 I 0.000
CERSUDRAFT_111018 Ceriporiopsis subvermispora CERSUDRAFT_111018 I 0.000
CFIO01_06489 Colletotrichum fioriniae CFIO01_06489 I 0.000
CGGC5_4303 Colletotrichum gloeosporioides CGGC5_4303 I 0.000
CH063_04817 Colletotrichum higginsianum CH063_04817 I 0.000
CHGG_07655 Chaetomium globosum CHGG_07655 I 0.000
CMQ_2334 Grosmannia clavigera CMQ_2334 I 0.000
Cob_08727 Colletotrichum orbiculare Cob_08727 I 0.000
COCC4DRAFT_162164 Bipolaris maydis COCC4DRAFT_162164 I 0.000
COCCADRAFT_5842 Bipolaris zeicola COCCADRAFT_5842 I 0.000
COCMIDRAFT_5916 Bipolaris oryzae COCMIDRAFT_5916 I 0.000
COCSADRAFT_82804 Bipolaris sorokiniana COCSADRAFT_82804 I 0.000
COCVIDRAFT_24723 Bipolaris victoriae COCVIDRAFT_24723 I 0.000
CPC735_030240 Coccidioides posadasii CPC735_030240 I 0.000
CPUR_02782 Claviceps purpurea CPUR_02782 I 0.000
CSUB01_10732 Colletotrichum sublineola CSUB01_10732 I 0.000
CTHT_0027590 Chaetomium thermophilum CTHT_0027590 I 0.000
DOTSEDRAFT_72726 Dothistroma septosporum DOTSEDRAFT_72726 I 0.000
EPUS_07035 Endocarpon pusillum EPUS_07035 I 0.000
EURHEDRAFT_374583 Aspergillus ruber EURHEDRAFT_374583 I 0.000
EV44_g6012 Erysiphe necator EV44_g6012 I 0.000
F503_04087 Ophiostoma piceae uamh F503_04087 I 0.000
FFUJ_13017 Fusarium fujikuroi FFUJ_13017 I 0.000
FGRRES_16557 Fusarium graminearum FGRRES_16557 I 0.000
FPSE_05803 Fusarium pseudograminearum FPSE_05803 I 0.000
G647_04054 Cladophialophora carrionii G647_04054 I 0.000
GALMADRAFT_219890 Galerina marginata GALMADRAFT_219890 I 0.000
GGTG_06066 Gaeumannomyces graminis GGTG_06066 I 0.000
GLRG_10729 Colletotrichum graminicola GLRG_10729 I 0.000
GMDG_07609 Pseudogymnoascus destructans GMDG_07609 I 0.000
GSTUM_00011726001 Tuber melanosporum GSTUM_00011726001 I 0.000
H072_8579 Dactylellina haptotyla H072_8579 I 0.000
H101_00678 Trichophyton interdigitale H101_00678 I 0.000
HCBG_06506 Histoplasma capsulatum HCBG_06506 I 0.000
HMPREF1120_02353 Exophiala dermatitidis HMPREF1120_02353 I 0.000
HMPREF1541_08981 Cyphellophora europaea HMPREF1541_08981 I 0.000
HMPREF1624_03854 Sporothrix schenckii HMPREF1624_03854 I 0.000
K443DRAFT_676997 Laccaria amethystina K443DRAFT_676997 I 0.000
KAFR_0A07050 Kazachstania africana KAFR_0A07050 I 0.000
KLLA0_C16203g Kluyveromyces lactis KLLA0_C16203g I 0.000
KLTH0H03410g Lachancea thermotolerans KLTH0H03410g I 0.000
KNAG_0F01780 Kazachstania naganishii KNAG_0F01780 I 0.000
KUCA_T00003760001 Kuraishia capsulata KUCA_T00003760001 I 0.000
LACBIDRAFT_311495 Laccaria bicolor LACBIDRAFT_311495 I 0.000
LALA0_S05e06744g Lachancea lanzarotensis LALA0_S05e06744g I 0.000
LEMA_P003470.1 Leptosphaeria maculans LEMA_P003470.1 I 0.000
M413DRAFT_24200 Hebeloma cylindrosporum M413DRAFT_24200 I 0.000
M437DRAFT_88829 Aureobasidium melanogenum M437DRAFT_88829 I 0.000
M438DRAFT_363827 Aureobasidium pullulans M438DRAFT_363827 I 0.000
MAC_04053 Metarhizium acridum MAC_04053 I 0.000
MAJ_08493 Metarhizium majus MAJ_08493 I 0.000
MAM_07193 Metarhizium album MAM_07193 I 0.000
MANI_025504 Metarhizium anisopliae MANI_025504 I 0.000
MAPG_04048 Magnaporthe poae MAPG_04048 I 0.000
MBM_08533 Marssonina brunnea MBM_08533 I 0.000
MBR_07220 Metarhizium brunneum MBR_07220 I 0.000
MCYG_01846 Arthroderma otae MCYG_01846 I 0.000
MGG_04878 Magnaporthe oryzae MGG_04878 I 0.000
MGU_06069 Metarhizium guizhouense MGU_06069 I 0.000
MGYG_04221 Microsporum gypseum MGYG_04221 I 0.000
MPH_03949 Macrophomina phaseolina MPH_03949 I 0.000
MYCFIDRAFT_104171 Pseudocercospora fijiensis MYCFIDRAFT_104171 I 0.000
Mycgr3G74352 Zymoseptoria tritici Mycgr3G74352 I 0.000
MYCTH_2301553 Myceliophthora thermophila MYCTH_2301553 I 0.000
NCAS_0D03980 Naumovozyma castellii NCAS_0D03980 I 0.000
NDAI_0I00930 Naumovozyma dairenensis NDAI_0I00930 I 0.000
NEUTE1DRAFT_127630 Neurospora tetrasperma NEUTE1DRAFT_127630 I 0.000
OIDMADRAFT_165409 Oidiodendron maius OIDMADRAFT_165409 I 0.000
PAAG_04304 Paracoccidioides sp lutzii PAAG_04304 I 0.000
PABG_04080 Paracoccidioides brasiliensis PABG_04080 I 0.000
PAS_chr2-1_0025 Komagataella pastoris PAS_chr2-1_0025 I 0.000
PAXRUDRAFT_826282 Paxillus rubicundulus PAXRUDRAFT_826282 I 0.000
PCH_Pc21g15950 Penicillium rubens PCH_Pc21g15950 I 0.000
PDE_09498 Penicillium oxalicum PDE_09498 I 0.000
PDIP_48900 Penicillium digitatum PDIP_48900 I 0.000
PEX1_017870 Penicillium expansum PEX1_017870 I 0.000
PFICI_11606 Pestalotiopsis fici PFICI_11606 I 0.000
PILCRDRAFT_827743 Piloderma croceum PILCRDRAFT_827743 I 0.000
PITC_013420 Penicillium italicum PITC_013420 I 0.000
PLEOSDRAFT_1064481 Pleurotus ostreatus PLEOSDRAFT_1064481 I 0.000
PMAA_082150 Talaromyces marneffei PMAA_082150 I 0.000
PODANS_2_6940 Podospora anserina PODANS_2_6940 I 0.000
PTRG_11043 Pyrenophora triticirepentis PTRG_11043 I 0.000
PTT_07707 Pyrenophora teres PTT_07707 I 0.000
PV04_04630 Capronia semiimmersa PV04_04630 I 0.000
PV05_02348 Exophiala xenobiotica PV05_02348 I 0.000
PV06_01624 Exophiala oligosperma PV06_01624 I 0.000
PV07_05545 Cladophialophora immunda PV07_05545 I 0.000
PV08_02493 Exophiala spinifera PV08_02493 I 0.000
PV09_01976 Verruconis gallopava PV09_01976 I 0.000
PV10_06581 Exophiala mesophila PV10_06581 I 0.000
PV11_02063 Exophiala sideris PV11_02063 I 0.000
PVAR5_5506 Byssochlamys spectabilis PVAR5_5506 I 0.000
S40285_02726 Stachybotrys chlorohalonata S40285_02726 I 0.000
S40288_09644 Stachybotrys chartarum S40288_09644 I 0.000
SAPIO_CDS8283 Scedosporium apiospermum SAPIO_CDS8283 I 0.000
SBOR_1449 Sclerotinia borealis SBOR_1449 I 0.000
SEPMUDRAFT_46716 Sphaerulina musiva SEPMUDRAFT_46716 I 0.000
SETTUDRAFT_92929 Setosphaeria turcica SETTUDRAFT_92929 I 0.000
SKUD_186004 Saccharomyces kudriavzevii SKUD_186004 I 0.000
SMAC_03938 Sordaria macrospora SMAC_03938 I 0.000
SNOG_11200 Phaeosphaeria nodorum SNOG_11200 I 0.000
SPBR_01187 Sporothrix brasiliensis SPBR_01187 I 0.000
SS1G_01477 Sclerotinia sclerotiorum SS1G_01477 I 0.000
SU7_0694 Saccharomyces arboricola SU7_0694 I 0.000
TEQG_03551 Trichophyton equinum TEQG_03551 I 0.000
TESG_00566 Trichophyton tonsurans TESG_00566 I 0.000
THITE_2107776 Thielavia terrestris THITE_2107776 I 0.000
TPHA_0E02720 Tetrapisispora phaffii TPHA_0E02720 I 0.000
TRIATDRAFT_229470 Trichoderma atroviride TRIATDRAFT_229470 I 0.000
TRV_05239 Trichophyton verrucosum TRV_05239 I 0.000
TSTA_116820 Talaromyces stipitatus TSTA_116820 I 0.000
U727_00430460301 Penicillium solitum U727_00430460301 I 0.000
UCRNP2_8300 Neofusicoccum parvum UCRNP2_8300 I 0.000
UCRPA7_3563 Togninia minima UCRPA7_3563 I 0.000
UREG_03885 Uncinocarpus reesii UREG_03885 I 0.000
UV8b_135 Ustilaginoidea virens UV8b_135 I 0.000
VDAG_09307 Verticillium dahliae VDAG_09307 I 0.000
VDBG_07586 Verticillium alfalfae VDBG_07586 I 0.000
VHEMI05600 Torrubiella hemipterigena VHEMI05600 I 0.000
W97_02158 Coniosporium apollinis W97_02158 I 0.000
X797_006583 Metarhizium robertsii X797_006583 I 0.000
YALI0_C16390g Yarrowia lipolytica YALI0_C16390g I 0.000
ECM5 Saccharomyces cerevisiae YMR176W I 0.000
Z517_06623 Fonsecaea pedrosoi Z517_06623 I 0.000
Z518_00744 Rhinocladiella mackenziei Z518_00744 I 0.000
Z519_00926 Cladophialophora bantiana Z519_00926 I 0.000
ZBAI_04622 Zygosaccharomyces bailii ZBAI_04622 I 0.000
ZBAI_06663 Zygosaccharomyces bailii ZBAI_06663 I 0.000
ZYRO0E07546g Zygosaccharomyces rouxii ZYRO0E07546g I 0.000
estExt_fgenesh2_pg.C_10495 Neurospora discreta estExt_fgenesh2_pg.C_10495 I 0.000
estExt_Genewise1Plus.C_70765 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_70765 I 0.000
estExt_Genewise1Plus.C_chr_80065 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_80065 I 0.000
fgenesh1_pg.C_scaffold_2000567 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_2000567 I 0.000
gww2.2.61.1 Phanerochaete chrysosporium gww2.2.61.1 I 0.000
Scas_Contig720.39 Saccharomyces castellii Scas_Contig720.39 I 0.000
16628_YMR176W Saccharomyces paradoxus 16628_YMR176W I 0.000
17061_Multiple Saccharomyces mikatae 17061_Multiple I 0.000
18935_YMR176W Saccharomyces bayanus 18935_YMR176W I 0.000
AB01205.1 Alternaria brassicicola AB01205.1 I 0.000
estExt_fgenesh1_pg.C_11736 Cryphonectria parasitica estExt_fgenesh1_pg.C_11736 I 0.000
fgenesh1_pg.00153_#_202 Aspergillus carbonarius fgenesh1_pg.00153_#_202 I 0.000
KLTH0H03410g Kluyveromyces thermotolerans KLTH0H03410g I 0.000
Kwal_24206 Kluyveromyces waltii Kwal_24206 I 0.000
Pc21g15950 Penicillium chrysogenum Pc21g15950 I 0.000
PMAA_082150 Penicillium marneffei PMAA_082150 I 0.000
SAKL0A03674g Lachancea kluyveri SAKL0A03674g I 0.000
XP_002490905.1 Pichia pastoris XP_002490905.1 I 0.000
BN946_scf184380.g6 Trametes cinnabarina BN946_scf184380.g6 N 0.000
DICSQDRAFT_154681 Dichomitus squalens DICSQDRAFT_154681 N 0.000
ENSCING00000020769 Ciona intestinalis ENSCING00000020769 N 0.000
ENSCSAVG00000000499 Ciona savignyi ENSCSAVG00000000499 N 0.000