ACYPI007541 (Acyrthosiphon pisum)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ACYPI007541 T319297_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.792 0.792
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.792 0.792
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.792 0.792
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.792 0.792
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.746 0.746
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.746 0.746
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.746 0.746
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.746 0.746
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.746 0.746
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.746 0.746
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.746 0.746
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.746 0.746
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.746 0.746
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.746 0.746
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.746 0.746
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.746 0.746
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.738 0.738
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.738 0.738
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.738 0.738
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.738 0.738
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.738 0.738
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.738 0.738
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.738 0.738
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.738 0.738
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.738 0.738
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.738 0.738
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.738 0.738
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.738 0.738
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.738 0.738
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.738 0.738
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.738 0.738
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.738 0.738
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.738 0.738
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.738 0.738
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.738 0.738
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.738 0.738
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.738 0.738
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.738 0.738
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.738 0.738
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.738 0.738
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.715 0.715
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACYPI007541-PA Runt 43 172

Links

Other Runt family TFs
Other Acyrthosiphon pisum TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I
Bo2g104810 Brassica oleracea Bo2g104810 I
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I
Lus10014578.g Linum usitatissimum Lus10014578.g I
Lus10022316.g Linum usitatissimum Lus10022316.g I
Lus10032108.g Linum usitatissimum Lus10032108.g I
MDP0000925348 Malus domestica MDP0000925348 I
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I
TCM_025671 Theobroma cacao TCM_025671 I
MTR_3g065100 Medicago truncatula MTR_3g065100 I
TCM_026842 Theobroma cacao TCM_026842 I
TCM_026845 Theobroma cacao TCM_026845 I
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I
GLYMA18G04760 Glycine max GLYMA18G04760 I
Ca_06495 Cicer arietinum Ca_06495 I
Bra029469 Brassica rapa Bra029469 I
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I
Bo9g078450 Brassica oleracea Bo9g078450 I
Bra018490 Brassica rapa Bra018490 I
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I
Cucsa.050930 Cucumis sativus Cucsa.050930 I
Ca_13275 Cicer arietinum Ca_13275 I
MTR_2g035610 Medicago truncatula MTR_2g035610 N
MTR_4g031910 Medicago truncatula MTR_4g031910 N
MTR_4g032260 Medicago truncatula MTR_4g032260 N
MTR_4g032290 Medicago truncatula MTR_4g032290 N
MTR_5g047580 Medicago truncatula MTR_5g047580 N
MTR_1g084950 Medicago truncatula MTR_1g084950 N
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N
Gorai.013G210600 Gossypium raimondii Gorai.013G210600 N
PRUPE_ppa022382mg Prunus persica PRUPE_ppa022382mg N
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N
Ca_03592 Cicer arietinum Ca_03592 N
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N
Pm007730 Prunus mume Pm007730 N
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N