GM23050 (Drosophila sechellia)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 FBgn0177918 T319553_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		1.000 1.000
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.723 0.723
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.723 0.723
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.723 0.723
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0204527 Runt 107 236

Links

Other Runt family TFs
Other Drosophila sechellia TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa003901mg Prunus persica PRUPE_ppa003901mg I
Lus10035597.g Linum usitatissimum Lus10035597.g I
Cucsa.240980 Cucumis sativus Cucsa.240980 I
Cla017983 Citrullus lanatus Cla017983 I
Solyc09g009760.1 Solanum lycopersicum Solyc09g009760.1 I
MTR_7g104190 Medicago truncatula MTR_7g104190 I
Traes_5BL_6C613A3D9 Triticum aestivum Traes_5BL_6C613A3D9 N
Sb05g003420 Sorghum bicolor Sb05g003420 N
Sb08g003500 Sorghum bicolor Sb08g003500 N
Si012481m.g Setaria italica Si012481m.g N
Si026452m.g Setaria italica Si026452m.g N
Traes_4AL_792F1D482 Triticum aestivum Traes_4AL_792F1D482 N
Traes_4BS_8439AC445 Triticum aestivum Traes_4BS_8439AC445 N
Traes_4DS_FAFED0328 Triticum aestivum Traes_4DS_FAFED0328 N
Traes_5AL_09C375647 Triticum aestivum Traes_5AL_09C375647 N
ORUFI12G03900 Oryza rufipogon ORUFI12G03900 N
Traes_5DL_A528A05A3 Triticum aestivum Traes_5DL_A528A05A3 N
TRIUR3_33961 Triticum urartu TRIUR3_33961 N
Pavir.Ca00162 Panicum virgatum Pavir.Ca00162 N
Pavir.Cb02058 Panicum virgatum Pavir.Cb02058 N
Pavir.Hb01810 Panicum virgatum Pavir.Hb01810 N
Pavir.J28001 Panicum virgatum Pavir.J28001 N
OB12G13360 Oryza brachyantha OB12G13360 N
BGIOSGA037021 Oryza indica BGIOSGA037021 N
BRADI4G42120 Brachypodium distachyon BRADI4G42120 N
F775_01937 Aegilops tauschii F775_01937 N
GSMUA_Achr5G17460_001 Musa acuminata GSMUA_Achr5G17460_001 N
GSMUA_Achr9G02570_001 Musa acuminata GSMUA_Achr9G02570_001 N
LPERR11G02970 Leersia perrieri LPERR11G02970 N
LPERR12G03230 Leersia perrieri LPERR12G03230 N
MLOC_15316 Hordeum vulgare MLOC_15316 N
MLOC_22590 Hordeum vulgare MLOC_22590 N
OB11G12850 Oryza brachyantha OB11G12850 N
OS11G0154900 Oryza sativa OS11G0154900 N
OBART11G03540 Oryza barthii OBART11G03540 N
OBART12G03450 Oryza barthii OBART12G03450 N
OGLUM11G03180 Oryza glumaepatula OGLUM11G03180 N
OGLUM12G04120 Oryza glumaepatula OGLUM12G04120 N
OLONG_000717 Oryza longistaminata OLONG_000717 N
OLONG_019285 Oryza longistaminata OLONG_019285 N
ONIVA12G03070 Oryza nivara ONIVA12G03070 N
OPUNC12G03250 Oryza punctata OPUNC12G03250 N
BGIOSGA034827 Oryza indica BGIOSGA034827 N