Cflo_03911--XP_394014.2_APIME (Camponotus floridanus)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Cflo_03911--XP_394014.2_APIME T319651_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.808 0.808
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.808 0.808
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.808 0.808
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.808 0.808
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.769 0.769
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.769 0.769
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.769 0.769
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.769 0.769
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.769 0.769
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.769 0.769
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.769 0.769
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.769 0.769
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.769 0.769
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.769 0.769
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.769 0.769
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.769 0.769
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.762 0.762
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.762 0.762
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.762 0.762
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.762 0.762
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.762 0.762
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.762 0.762
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.762 0.762
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.762 0.762
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.762 0.762
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.762 0.762
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.762 0.762
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.762 0.762
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.754 0.754
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.754 0.754
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.754 0.754
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.754 0.754
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.754 0.754
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.754 0.754
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.754 0.754
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.754 0.754
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.754 0.754
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.754 0.754
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.754 0.754
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.754 0.754
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.715 0.715
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cflo_03911--XP_394014.2_APIME Runt 92 221

Links

Other Runt family TFs
Other Camponotus floridanus TFs

365 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10010768m.g Citrus clementina Ciclev10010768m.g N
Traes_7DL_613F5240E Triticum aestivum Traes_7DL_613F5240E N
OCP3 Vitis vinifera VIT_04s0008g05190 N
Cla021272 Citrullus lanatus Cla021272 N
Pm004594 Prunus mume Pm004594 N
29848.m004652 Ricinus communis 29848.m004652 N
cassava18449.valid.m1 Manihot esculenta cassava18449.valid.m1 N
Cucsa.310460 Cucumis sativus Cucsa.310460 N
mgf000632m Mimulus guttatus mgf000632m N
Aquca_001_00810 Aquilegia coerulea Aquca_001_00810 N
Bostr.23997s0022 Boechera stricta Bostr.23997s0022 N
Cagra.7526s0026 Capsella grandiflora Cagra.7526s0026 N
Carubv10002492m.g Capsella rubella Carubv10002492m.g N
Traes_7BL_E2E7AA383 Triticum aestivum Traes_7BL_E2E7AA383 N
evm.TU.supercontig_115.10 Carica papaya evm.TU.supercontig_115.10 N
gene11668-v1.0-hybrid Fragaria vesca gene11668-v1.0-hybrid N
Gorai.004G274200 Gossypium raimondii Gorai.004G274200 N
Lus10002029.g Linum usitatissimum Lus10002029.g N
Lus10002899.g Linum usitatissimum Lus10002899.g N
MDP0000119866 Malus domestica MDP0000119866 N
MDP0000202143 Malus domestica MDP0000202143 N
orange1.1g040593m.g Citrus sinensis orange1.1g040593m.g N
Thhalv10013990m.g Eutrema salsugineum Thhalv10013990m.g N
PK00680.1 Cannabis sativa PK00680.1 N
chr1.CM0442.170.nd Lotus japonicus chr1.CM0442.170.nd N
OGLUM06G21270 Oryza glumaepatula OGLUM06G21270 N
BGIOSGA023211 Oryza indica BGIOSGA023211 N
Bo9g171420 Brassica oleracea Bo9g171420 N
Bra008975 Brassica rapa Bra008975 N
BRADI1G36770 Brachypodium distachyon BRADI1G36770 N
BRADI1G58817 Brachypodium distachyon BRADI1G58817 N
OCP3 Arabidopsis lyrata fgenesh2_kg.6__1093__AT5G11270.1 N
GLYMA04G07230 Glycine max GLYMA04G07230 N
GLYMA06G07330 Glycine max GLYMA06G07330 N
GSMUA_Achr7G08370_001 Musa acuminata GSMUA_Achr7G08370_001 N
MLOC_45474 Hordeum vulgare MLOC_45474 N
OB06G27850 Oryza brachyantha OB06G27850 N
OBART06G20210 Oryza barthii OBART06G20210 N
OCP3 Arabidopsis thaliana AT5G11270 N
OLONG_013537 Oryza longistaminata OLONG_013537 N
OMERI06G20820 Oryza meridionalis OMERI06G20820 N
ONIVA06G23990 Oryza nivara ONIVA06G23990 N
OPUNC06G18430 Oryza punctata OPUNC06G18430 N
ORUFI06G21620 Oryza rufipogon ORUFI06G21620 N
OS06G0601000 Oryza sativa OS06G0601000 N
PGSC0003DMG400020785 Solanum tuberosum PGSC0003DMG400020785 N
POPTR_0006s26790 Populus trichocarpa POPTR_0006s26790 N
PRUPE_ppa007560mg Prunus persica PRUPE_ppa007560mg N
Solyc08g061140.2 Solanum lycopersicum Solyc08g061140.2 N
Traes_7AL_0FFE02C4C Triticum aestivum Traes_7AL_0FFE02C4C N