Pavir.J13146 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.J13146 T321231_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.755 0.755
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.755 0.755
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J13146.1.p RWP-RK 123 171

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC050 Arabidopsis thaliana AT3G10480 D
Cla020838 Citrullus lanatus Cla020838 I
MDP0000437676 Malus domestica MDP0000437676 I
Eucgr.J01038 Eucalyptus grandis Eucgr.J01038 I
Carubv10013694m.g Capsella rubella Carubv10013694m.g I
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I
mgf004743m Mimulus guttatus mgf004743m I
mgf000623m Mimulus guttatus mgf000623m I
Cucsa.308760 Cucumis sativus Cucsa.308760 I
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I
VIT_13s0019g05230 Vitis vinifera VIT_13s0019g05230 I
Solyc05g055470.2 Solanum lycopersicum Solyc05g055470.2 I
Sb07g023900 Sorghum bicolor Sb07g023900 I
PGSC0003DMG402023373 Solanum tuberosum PGSC0003DMG402023373 I
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I
PGSC0003DMG400031071 Solanum tuberosum PGSC0003DMG400031071 N