MTR_7g100880 (Medicago truncatula)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 MTR_7g100880 T321393_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES81815 S1FA 19 84

Links

Other S1FA family TFs
Other Medicago truncatula TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
S1FA3 Arabidopsis thaliana AT3G09735 D 0.773
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.773
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.773
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.773
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.712
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.758
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.727
mgf004062m Mimulus guttatus mgf004062m I 0.788
mgf000337m Mimulus guttatus mgf000337m I 0.833
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.758
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.833
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.803
29805.m001471 Ricinus communis 29805.m001471 I 0.773
Cla018556 Citrullus lanatus Cla018556 I 0.788
Cla018106 Citrullus lanatus Cla018106 I 0.758
Ca_12028 Cicer arietinum Ca_12028 I 0.864
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.727
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.712
Ca_12027 Cicer arietinum Ca_12027 I 0.894
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.758
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.818
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.803
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.758
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.833
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.803
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.803
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.833
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.818
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.803
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.712
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
PK08477.1 Cannabis sativa PK08477.1 I 0.758
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.833
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.742
S1FA2 Arabidopsis thaliana AT2G37120 I 0.712
S1FA1 Arabidopsis thaliana AT3G53370 I 0.727
Bo1g144300 Brassica oleracea Bo1g144300 I 0.758
Bo3g061880 Brassica oleracea Bo3g061880 I 0.727
Bo5g138130 Brassica oleracea Bo5g138130 I 0.773
Bra029784 Brassica rapa Bra029784 I 0.773
Bra034084 Brassica rapa Bra034084 I 0.758
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.727
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.750
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.864
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.848
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.818
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.848
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.712
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.848
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.818
TCM_022113 Theobroma cacao TCM_022113 I 0.803
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.788
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.773
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.864
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.833
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.803
OB04G18770 Oryza brachyantha OB04G18770 I 0.727
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.955
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.924
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.727
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.773
MDP0000276000 Malus domestica MDP0000276000 N 0.712
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.758
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.742
Pm002519 Prunus mume Pm002519 N 0.742
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.732
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.773