OB04G18780 (Oryza brachyantha)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 OB04G18780 T321398_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB04G18780.1 S1FA 15 80

Links

Other S1FA family TFs
Other Oryza brachyantha TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
S1FA3 Arabidopsis thaliana AT3G09735 D 0.712
Ca_12027 Cicer arietinum Ca_12027 I 0.727
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.712
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.712
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.818
mgf000337m Mimulus guttatus mgf000337m I 0.727
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.742
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.773
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.712
29805.m001471 Ricinus communis 29805.m001471 I 0.712
Cla018556 Citrullus lanatus Cla018556 I 0.773
Cla018106 Citrullus lanatus Cla018106 I 0.742
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.712
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.727
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.773
TCM_022113 Theobroma cacao TCM_022113 I 0.788
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.758
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.727
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.727
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.742
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.742
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.818
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.758
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.712
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.727
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.742
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.758
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.758
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.773
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.773
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.758
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.727
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.773
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.727
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.773
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.758
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.712
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.727
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.712
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.712
S1FA2 Arabidopsis thaliana AT2G37120 I 0.712
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.742
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.955
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.727
OB04G18770 Oryza brachyantha OB04G18770 I 0.924
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.833
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.742
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.727
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.727
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.758
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.742
OPUNC04G09650 Oryza punctata OPUNC04G09650 I 0.773
Bra003132 Brassica rapa Bra003132 I 0.727
Bo6g067310 Brassica oleracea Bo6g067310 I 0.727
S1FA1 Arabidopsis thaliana AT3G53370 I 0.824
Bra029784 Brassica rapa Bra029784 I 0.712
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.985
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.758
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.939
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.773
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.985
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.924
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.894
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.894
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.924
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.879
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.742
MDP0000276000 Malus domestica MDP0000276000 N 0.758
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.924
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.939
S1FA2 Oryza sativa OS04G0408700 N 0.924
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.985
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.924
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.758
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.894
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.985
Si011030m.g Setaria italica Si011030m.g N 0.924
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.924
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.985
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.939
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.939
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.909
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.985
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.924
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.985
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.909
Pm002519 Prunus mume Pm002519 N 0.758
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.985
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.924
OBART04G11660 Oryza barthii OBART04G11660 N 0.985
OBART04G11650 Oryza barthii OBART04G11650 N 0.924
OS04G0408900 Oryza sativa OS04G0408900 N 0.985