Carubv10025429m.g (Capsella rubella)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Carubv10025429m.g T321492_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025429m S1FA 11 76

Links

Other S1FA family TFs
Other Capsella rubella TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
S1FA3 Arabidopsis thaliana AT3G09735 D 0.742
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 1.000
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.758
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.848
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.985
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.758
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.864
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.742
mgf004062m Mimulus guttatus mgf004062m I 0.788
mgf000337m Mimulus guttatus mgf000337m I 0.803
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.742
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.758
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.758
29805.m001471 Ricinus communis 29805.m001471 I 0.758
Cla018556 Citrullus lanatus Cla018556 I 0.727
Cla018106 Citrullus lanatus Cla018106 I 0.758
Ca_12028 Cicer arietinum Ca_12028 I 0.712
Ca_12027 Cicer arietinum Ca_12027 I 0.712
TCM_022113 Theobroma cacao TCM_022113 I 0.712
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.712
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.712
S1FA2 Arabidopsis thaliana AT2G37120 I 0.939
PK08477.1 Cannabis sativa PK08477.1 I 0.712
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.788
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.970
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.879
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.742
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.773
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.758
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.712
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.773
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.773
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.758
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.742
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.788
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.742
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.758
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.848
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.773
Bra006994 Brassica rapa Bra006994 I 0.818
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.727
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.970
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.712
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.742
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.750
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.879
Bra039779 Brassica rapa Bra039779 I 0.833
Bra034084 Brassica rapa Bra034084 I 0.758
Bra029784 Brassica rapa Bra029784 I 0.773
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.712
Bra003132 Brassica rapa Bra003132 I 0.894
Bo6g067310 Brassica oleracea Bo6g067310 I 0.894
Bo5g138130 Brassica oleracea Bo5g138130 I 0.758
Bo3g061880 Brassica oleracea Bo3g061880 I 0.742
Bo1g144300 Brassica oleracea Bo1g144300 I 0.758
Bo00703s150 Brassica oleracea Bo00703s150 I 0.818
Bo00703s130 Brassica oleracea Bo00703s130 I 0.818
S1FA1 Arabidopsis thaliana AT3G53370 I 0.879
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.803
OB04G18780 Oryza brachyantha OB04G18780 I 0.712
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.727
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.773
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.742
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.758
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.773
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.727
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.714
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.712
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.712
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.712
Pm002519 Prunus mume Pm002519 N 0.727
OS04G0408900 Oryza sativa OS04G0408900 N 0.712
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.712
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.712
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.712
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.712
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.712
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.712
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.712
OBART04G11660 Oryza barthii OBART04G11660 N 0.712