CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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si:ch73-302a13.2
(
Gasterosteus aculeatus
)
SAND
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01342 (SAND)
IPR000770
ENSGACG00000003620
T321718_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY
RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.977
0.760
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.977
0.747
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH
DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.973
0.787
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN
NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.973
0.773
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM
KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.973
0.773
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.973
0.773
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.973
0.773
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM
KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.973
0.773
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.973
0.773
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.973
0.773
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN
NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.970
0.747
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN
NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.970
0.747
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN
NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.970
0.733
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN
NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.970
0.733
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN
NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.970
0.733
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.970
0.733
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.970
0.733
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN
NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.969
0.773
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN
NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.950
0.640
For this family, TFs with SR scores >
0.843
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000004744
SAND
91
166
ETDVFYPITCGDVKATLVWNKFVCPGINVKCVQFNEQLISPKEFVCLAGKSTLKDWKRAIRLNSTMLRKIMDSGEL
Links
Other
SAND
family TFs
Other
Gasterosteus aculeatus
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
RFX5
Homo sapiens
ENSG00000143390
D
0.000
rfx5
Tetraodon nigroviridis
ENSTNIG00000005388
I
0.000
ENSORLG00000001269
Oryzias latipes
ENSORLG00000001269
I
0.000
ENSPANG00000005712
Papio anubis
ENSPANG00000005712
I
0.000
RFX5
Procavia capensis
ENSPCAG00000011056
I
0.000
ENSPFOG00000010592
Poecilia formosa
ENSPFOG00000010592
I
0.000
ENSPPYG00000000867
Pongo abelii
ENSPPYG00000000867
I
0.000
ENSPSIG00000018073
Pelodiscus sinensis
ENSPSIG00000018073
I
0.000
RFX5
Pan troglodytes
ENSPTRG00000001286
I
0.000
RFX5
Pteropus vampyrus
ENSPVAG00000011680
I
0.000
Rfx5
Rattus norvegicus
ENSRNOG00000021012
I
0.000
RFX5
Sorex araneus
ENSSARG00000000750
I
0.000
ENSSHAG00000014366
Sarcophilus harrisii
ENSSHAG00000014366
I
0.000
RFX5
Sus scrofa
ENSSSCG00000006625
I
0.000
ENSSTOG00000013246
Ictidomys tridecemlineatus
ENSSTOG00000013246
I
0.000
RFX5
Tupaia belangeri
ENSTBEG00000006419
I
0.000
RFX5
Otolemur garnettii
ENSOGAG00000008120
I
0.000
ENSTRUG00000000177
Takifugu rubripes
ENSTRUG00000000177
I
0.000
RFX5
Tursiops truncatus
ENSTTRG00000007023
I
0.000
ENSXMAG00000017295
Xiphophorus maculatus
ENSXMAG00000017295
I
0.000
Aan_R010941
Calypte anna
Aan_R010941
I
0.000
Afo_R007667
Aptenodytes forsteri
Afo_R007667
I
0.000
Alligator_sinensis_CCG020683.1
Alligator sinensis
Alligator_sinensis_CCG020683.1
I
0.000
ENSP00000389130-D1
Bos grunniens
ENSP00000389130-D1
I
0.000
ENSP00000389130
Macaca fascicularis
ENSP00000389130
I
0.000
Gfo_R003263
Geospiza fortis
Gfo_R003263
I
0.000
Myotis_brandtii_RFX5_10008035
Myotis brandtii
Myotis_brandtii_RFX5_10008035
I
0.000
Ogr13052
Ophisaurus gracilis
Ogr13052
I
0.000
Pvit_04986
Pogona vitticeps
Pvit_04986
I
0.000
rfx5
Xenopus tropicalis
XB-GENE-5942579
I
0.000
rfx5.S
Xenopus laevis
XB-GENE-6079297
I
0.000
RFX5
Felis catus
ENSFCAG00000005568
I
0.000
ENSAMEG00000000695
Ailuropoda melanoleuca
ENSAMEG00000000695
I
0.000
ENSAMXG00000008359
Astyanax mexicanus
ENSAMXG00000008359
I
0.000
RFX5
Bos taurus
ENSBTAG00000017580
I
0.000
RFX5
Canis familiaris
ENSCAFG00000012661
I
0.000
RFX5
Choloepus hoffmanni
ENSCHOG00000012900
I
0.000
RFX5
Callithrix jacchus
ENSCJAG00000007482
I
0.000
ENSCPOG00000010643
Cavia porcellus
ENSCPOG00000010643
I
0.000
ENSCSAG00000001799
Chlorocebus sabaeus
ENSCSAG00000001799
I
0.000
rfx5
Danio rerio
ENSDARG00000063258
I
0.000
ENSDORG00000015967
Dipodomys ordii
ENSDORG00000015967
I
0.000
RFX5
Equus caballus
ENSECAG00000024774
I
0.000
RFX5
Erinaceus europaeus
ENSEEUG00000010785
I
0.000
RFX5
Echinops telfairi
ENSETEG00000013503
I
0.000
ENSFALG00000010929
Ficedula albicollis
ENSFALG00000010929
I
0.000
ENSONIG00000003955
Oreochromis niloticus
ENSONIG00000003955
I
0.000
RFX5
Gallus gallus
ENSGALG00000000836
I
0.000
RFX5
Gorilla gorilla
ENSGGOG00000016795
I
0.000
RFX5
Loxodonta africana
ENSLAFG00000030906
I
0.000
ENSLOCG00000008459
Lepisosteus oculatus
ENSLOCG00000008459
I
0.000
ENSMEUG00000011101
Macropus eugenii
ENSMEUG00000011101
I
0.000
ENSMGAG00000001126
Meleagris gallopavo
ENSMGAG00000001126
I
0.000
RFX5
Myotis lucifugus
ENSMLUG00000015218
I
0.000
ENSMMUG00000013172
Macaca mulatta
ENSMMUG00000013172
I
0.000
ENSMPUG00000003735
Mustela putorius furo
ENSMPUG00000003735
I
0.000
Rfx5
Mus musculus
ENSMUSG00000005774
I
0.000
ENSNLEG00000010170
Nomascus leucogenys
ENSNLEG00000010170
I
0.000
ENSOARG00000020987
Ovis aries
ENSOARG00000020987
I
0.000
ENSOCUG00000011564
Oryctolagus cuniculus
ENSOCUG00000011564
I
0.000
ENSACAG00000029645
Anolis carolinensis
ENSACAG00000029645
I
0.000