GMEB2 (Pan troglodytes)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSPTRG00000013744 T321887_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.994 1.000
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.994 1.000
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.994 1.000
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.994 1.000
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.994 1.000
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.994 1.000
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.994 1.000
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.992 0.947
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.992 0.933
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.986 0.747
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.986 0.747
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.986 0.733
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.986 0.733
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.986 0.733
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.986 0.733
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.986 0.733
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.981 0.707
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.981 0.693
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.956 0.627
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000023672 SAND 87 162

Links

Other SAND family TFs
Other Pan troglodytes TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BZIP68 Arabidopsis thaliana AT1G32150 D
BZIP16 Arabidopsis thaliana AT2G35530 D
GBF3 Arabidopsis thaliana AT2G46270 D
GBF2 Arabidopsis thaliana AT4G01120 D
GBF1 Arabidopsis thaliana AT4G36730 D
Q40645_ORYSA Oryza sativa Q40645_ORYSA D
CPRF1_PETCR Petroselinum crispum CPRF1_PETCR D
CPRF3_PETCR Petroselinum crispum CPRF3_PETCR D
Q41109_PHAVU Phaseolus vulgaris Q41109_PHAVU D
TAF1_TOBAC Nicotiana tabacum TAF1_TOBAC D
PK09653.1 Cannabis sativa PK09653.1 D
PK23964.1 Cannabis sativa PK23964.1 D
GBF2 Arabidopsis lyrata Al_scaffold_0006_3899 I
AMTR_s00048p00108400 Amborella trichopoda AMTR_s00048p00108400 I
AMTR_s00059p00094730 Amborella trichopoda AMTR_s00059p00094730 I
AMTR_s00158p00056990 Amborella trichopoda AMTR_s00158p00056990 I
BGIOSGA001085 Oryza indica BGIOSGA001085 I
BGIOSGA020389 Oryza indica BGIOSGA020389 I
BGIOSGA025382 Oryza indica BGIOSGA025382 I
BGIOSGA036419 Oryza indica BGIOSGA036419 I
Bo1g005460 Brassica oleracea Bo1g005460 I
Bo3g039150 Brassica oleracea Bo3g039150 I
Bo4g010410 Brassica oleracea Bo4g010410 I
Bo4g038560 Brassica oleracea Bo4g038560 I
Bo9g003700 Brassica oleracea Bo9g003700 I
Bra004550 Brassica rapa Bra004550 I
Bra005335 Brassica rapa Bra005335 I
Bra010572 Brassica rapa Bra010572 I
Bra011701 Brassica rapa Bra011701 I
Bra037382 Brassica rapa Bra037382 I
BRADI1G54180 Brachypodium distachyon BRADI1G54180 I
BRADI2G15940 Brachypodium distachyon BRADI2G15940 I
BRADI2G45567 Brachypodium distachyon BRADI2G45567 I
F775_07803 Aegilops tauschii F775_07803 I
GBF3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002338 I
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I
GLYMA01G01740 Glycine max GLYMA01G01740 I
GLYMA02G06550 Glycine max GLYMA02G06550 I
GLYMA03G41590 Glycine max GLYMA03G41590 I
GLYMA07G06620 Glycine max GLYMA07G06620 I
GLYMA08G34280 Glycine max GLYMA08G34280 I
GLYMA09G34170 Glycine max GLYMA09G34170 I
GLYMA16G03190 Glycine max GLYMA16G03190 I
GLYMA16G15810 Glycine max GLYMA16G15810 I
GLYMA16G25600 Glycine max GLYMA16G25600 I
GLYMA19G44190 Glycine max GLYMA19G44190 I
GRMZM2G011932 Zea mays GRMZM2G011932 I
GRMZM2G074373 Zea mays GRMZM2G074373 I
GRMZM2G095078 Zea mays GRMZM2G095078 I
GRMZM2G117851 Zea mays GRMZM2G117851 I
GRMZM2G160136 Zea mays GRMZM2G160136 I
GRMZM2G171370 Zea mays GRMZM2G171370 I
GRMZM2G358701 Zea mays GRMZM2G358701 I
GRMZM5G848942 Zea mays GRMZM5G848942 I
GSMUA_Achr1G05050_001 Musa acuminata GSMUA_Achr1G05050_001 I
GSMUA_Achr4G04530_001 Musa acuminata GSMUA_Achr4G04530_001 I
GSMUA_Achr4G18980_001 Musa acuminata GSMUA_Achr4G18980_001 I
GSMUA_Achr4G33130_001 Musa acuminata GSMUA_Achr4G33130_001 I
GSMUA_Achr5G14150_001 Musa acuminata GSMUA_Achr5G14150_001 I
GSMUA_Achr6G00170_001 Musa acuminata GSMUA_Achr6G00170_001 I
GSMUA_Achr6G32000_001 Musa acuminata GSMUA_Achr6G32000_001 I
GSMUA_Achr9G05310_001 Musa acuminata GSMUA_Achr9G05310_001 I
LPERR01G21580 Leersia perrieri LPERR01G21580 I
LPERR03G32540 Leersia perrieri LPERR03G32540 I
LPERR05G21930 Leersia perrieri LPERR05G21930 I
LPERR07G06120 Leersia perrieri LPERR07G06120 I
LPERR12G05920 Leersia perrieri LPERR12G05920 I
MLOC_6711 Hordeum vulgare MLOC_6711 I
MTR_5g028850 Medicago truncatula MTR_5g028850 I
MTR_7g116890 Medicago truncatula MTR_7g116890 I
MTR_8g070820 Medicago truncatula MTR_8g070820 I
MTR_8g077950 Medicago truncatula MTR_8g077950 I
OB01G34490 Oryza brachyantha OB01G34490 I
OB05G33790 Oryza brachyantha OB05G33790 I
OB07G15280 Oryza brachyantha OB07G15280 I
OB12G16310 Oryza brachyantha OB12G16310 I
OBART01G25300 Oryza barthii OBART01G25300 I
OBART05G26280 Oryza barthii OBART05G26280 I
OBART07G07070 Oryza barthii OBART07G07070 I
OBART12G06770 Oryza barthii OBART12G06770 I
OGLUM01G29060 Oryza glumaepatula OGLUM01G29060 I
OGLUM05G27920 Oryza glumaepatula OGLUM05G27920 I
OGLUM07G06770 Oryza glumaepatula OGLUM07G06770 I
OGLUM12G08090 Oryza glumaepatula OGLUM12G08090 I
OLONG_003667 Oryza longistaminata OLONG_003667 I
OLONG_021599 Oryza longistaminata OLONG_021599 I
OLONG_021967 Oryza longistaminata OLONG_021967 I
OLONG_022047 Oryza longistaminata OLONG_022047 I
OMERI01G23000 Oryza meridionalis OMERI01G23000 I
OMERI03G30340 Oryza meridionalis OMERI03G30340 I
OMERI07G05820 Oryza meridionalis OMERI07G05820 I
OMERI12G04560 Oryza meridionalis OMERI12G04560 I
ONIVA01G28540 Oryza nivara ONIVA01G28540 I
ONIVA05G28290 Oryza nivara ONIVA05G28290 I
ONIVA07G05320 Oryza nivara ONIVA07G05320 I
ONIVA12G06500 Oryza nivara ONIVA12G06500 I
OPUNC01G25140 Oryza punctata OPUNC01G25140 I
OPUNC02G01690 Oryza punctata OPUNC02G01690 I
OPUNC05G23850 Oryza punctata OPUNC05G23850 I
OPUNC07G06790 Oryza punctata OPUNC07G06790 I
OPUNC12G06450 Oryza punctata OPUNC12G06450 I
ORGLA01G0206000 Oryza glaberrima ORGLA01G0206000 I
ORGLA05G0227800 Oryza glaberrima ORGLA05G0227800 I
ORGLA12G0063500 Oryza glaberrima ORGLA12G0063500 I
ORUFI01G28110 Oryza rufipogon ORUFI01G28110 I
ORUFI05G28170 Oryza rufipogon ORUFI05G28170 I
ORUFI07G07050 Oryza rufipogon ORUFI07G07050 I
ORUFI12G07600 Oryza rufipogon ORUFI12G07600 I
OS01G0658900 Oryza sativa OS01G0658900 I
OS05G0569300 Oryza sativa OS05G0569300 I
OS07G0209800 Oryza sativa OS07G0209800 I
PGSC0003DMG400000088 Solanum tuberosum PGSC0003DMG400000088 I
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I
PGSC0003DMG400018469 Solanum tuberosum PGSC0003DMG400018469 I
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I
POPTR_0001s01840 Populus trichocarpa POPTR_0001s01840 I
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I
POPTR_0003s09630 Populus trichocarpa POPTR_0003s09630 I
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I
POPTR_0014s08990 Populus trichocarpa POPTR_0014s08990 I
PRUPE_ppa006173mg Prunus persica PRUPE_ppa006173mg I
PRUPE_ppa006484mg Prunus persica PRUPE_ppa006484mg I
PRUPE_ppa008024mg Prunus persica PRUPE_ppa008024mg I
PRUPE_ppa020524mg Prunus persica PRUPE_ppa020524mg I
Sb02g006350 Sorghum bicolor Sb02g006350 I
Sb03g030050 Sorghum bicolor Sb03g030050 I
Sb08g008300 Sorghum bicolor Sb08g008300 I
Sb09g028990 Sorghum bicolor Sb09g028990 I
GBF1 Arabidopsis lyrata scaffold_700433.1 I
SELMODRAFT_125734 Selaginella moellendorffii SELMODRAFT_125734 I
SELMODRAFT_129391 Selaginella moellendorffii SELMODRAFT_129391 I
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I
Si001929m.g Setaria italica Si001929m.g I
Si022325m.g Setaria italica Si022325m.g I
Si022388m.g Setaria italica Si022388m.g I
Si030123m.g Setaria italica Si030123m.g I
Si039367m.g Setaria italica Si039367m.g I
Solyc01g095460.2 Solanum lycopersicum Solyc01g095460.2 I
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I
Solyc08g005290.2 Solanum lycopersicum Solyc08g005290.2 I
Solyc08g076100.2 Solanum lycopersicum Solyc08g076100.2 I
TCM_000436 Theobroma cacao TCM_000436 I
TCM_005210 Theobroma cacao TCM_005210 I
TCM_016606 Theobroma cacao TCM_016606 I
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I
Traes_2BL_245DDBC7B Triticum aestivum Traes_2BL_245DDBC7B I
TRIUR3_18341 Triticum urartu TRIUR3_18341 I
TRIUR3_31142 Triticum urartu TRIUR3_31142 I
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I
VIT_02s0025g01020 Vitis vinifera VIT_02s0025g01020 I
GBF1 Vitis vinifera VIT_04s0023g01360 I
VIT_15s0046g01440 Vitis vinifera VIT_15s0046g01440 I
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I
Ca_01293 Cicer arietinum Ca_01293 I
Ca_11455 Cicer arietinum Ca_11455 I
Ca_15839 Cicer arietinum Ca_15839 I
Ca_17787 Cicer arietinum Ca_17787 I
Cla008988 Citrullus lanatus Cla008988 I
Cla014415 Citrullus lanatus Cla014415 I
Cla016502 Citrullus lanatus Cla016502 I
Cla021500 Citrullus lanatus Cla021500 I
Pm018422 Prunus mume Pm018422 I
Pm023132 Prunus mume Pm023132 I
Pm024103 Prunus mume Pm024103 I
Pm026586 Prunus mume Pm026586 I
29646.m001068 Ricinus communis 29646.m001068 I
30068.m002661 Ricinus communis 30068.m002661 I
30174.m008698 Ricinus communis 30174.m008698 I
cassava11837.valid.m1 Manihot esculenta cassava11837.valid.m1 I
cassava29861.valid.m1 Manihot esculenta cassava29861.valid.m1 I
cassava29862.valid.m1 Manihot esculenta cassava29862.valid.m1 I
cassava37043.valid.m1 Manihot esculenta cassava37043.valid.m1 I
cassava43569.valid.m1 Manihot esculenta cassava43569.valid.m1 I
cassava43570.valid.m1 Manihot esculenta cassava43570.valid.m1 I
cassava43571.valid.m1 Manihot esculenta cassava43571.valid.m1 I
cassava45491.m1 Manihot esculenta cassava45491.m1 I
cassava46468.m1 Manihot esculenta cassava46468.m1 I
Cucsa.104970 Cucumis sativus Cucsa.104970 I
Cucsa.258940 Cucumis sativus Cucsa.258940 I
Cucsa.312800 Cucumis sativus Cucsa.312800 I
Cucsa.322110 Cucumis sativus Cucsa.322110 I
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I
mgf000639m Mimulus guttatus mgf000639m I
mgf003302m Mimulus guttatus mgf003302m I
mgf005151m Mimulus guttatus mgf005151m I
mgf008195m Mimulus guttatus mgf008195m I
mgf008605m Mimulus guttatus mgf008605m I
mgf013375m Mimulus guttatus mgf013375m I
mgf013423m Mimulus guttatus mgf013423m I
mgf014804m Mimulus guttatus mgf014804m I
Aquca_002_01218 Aquilegia coerulea Aquca_002_01218 I
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I
Aquca_037_00034 Aquilegia coerulea Aquca_037_00034 I
Bostr.23794s0549 Boechera stricta Bostr.23794s0549 I
Bostr.3359s0141 Boechera stricta Bostr.3359s0141 I
Bostr.7365s0064 Boechera stricta Bostr.7365s0064 I
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I
Cagra.0050s0071 Capsella grandiflora Cagra.0050s0071 I
Cagra.0993s0063 Capsella grandiflora Cagra.0993s0063 I
Cagra.1372s0011 Capsella grandiflora Cagra.1372s0011 I
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I
Carubv10001247m.g Capsella rubella Carubv10001247m.g I
Carubv10005287m.g Capsella rubella Carubv10005287m.g I
Carubv10023434m.g Capsella rubella Carubv10023434m.g I
Ciclev10001333m.g Citrus clementina Ciclev10001333m.g I
Ciclev10020314m.g Citrus clementina Ciclev10020314m.g I
Ciclev10025963m.g Citrus clementina Ciclev10025963m.g I
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I
Eucgr.H01256 Eucalyptus grandis Eucgr.H01256 I
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I
evm.TU.supercontig_2741.1 Carica papaya evm.TU.supercontig_2741.1 I
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I
gene18928-v1.0-hybrid Fragaria vesca gene18928-v1.0-hybrid I
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I
gene32022-v1.0-hybrid Fragaria vesca gene32022-v1.0-hybrid I
gene32024-v1.0-hybrid Fragaria vesca gene32024-v1.0-hybrid I
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I
Gorai.004G181900 Gossypium raimondii Gorai.004G181900 I
Gorai.007G105100 Gossypium raimondii Gorai.007G105100 I
Gorai.007G205700 Gossypium raimondii Gorai.007G205700 I
Gorai.008G068900 Gossypium raimondii Gorai.008G068900 I
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I
Lus10003034.g Linum usitatissimum Lus10003034.g I
Lus10005146.g Linum usitatissimum Lus10005146.g I
Lus10014324.g Linum usitatissimum Lus10014324.g I
Lus10026033.g Linum usitatissimum Lus10026033.g I
MDP0000185553 Malus domestica MDP0000185553 I
MDP0000231274 Malus domestica MDP0000231274 I
MDP0000239688 Malus domestica MDP0000239688 I
MDP0000286846 Malus domestica MDP0000286846 I
MDP0000493795 Malus domestica MDP0000493795 I
MDP0000545420 Malus domestica MDP0000545420 I
orange1.1g014660m.g Citrus sinensis orange1.1g014660m.g I
orange1.1g018605m.g Citrus sinensis orange1.1g018605m.g I
orange1.1g036551m.g Citrus sinensis orange1.1g036551m.g I
Pavir.Ba03287 Panicum virgatum Pavir.Ba03287 I
Pavir.Bb00931 Panicum virgatum Pavir.Bb00931 I
Pavir.Ca00403 Panicum virgatum Pavir.Ca00403 I
Pavir.Ca00968 Panicum virgatum Pavir.Ca00968 I
Pavir.Cb01814 Panicum virgatum Pavir.Cb01814 I
Pavir.Ea02315 Panicum virgatum Pavir.Ea02315 I
Pavir.J01411 Panicum virgatum Pavir.J01411 I
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I
SapurV1A.0063s0130 Salix purpurea SapurV1A.0063s0130 I
SapurV1A.0255s0070 Salix purpurea SapurV1A.0255s0070 I
SapurV1A.0817s0110 Salix purpurea SapurV1A.0817s0110 I
Thhalv10001533m.g Eutrema salsugineum Thhalv10001533m.g I
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I
Thhalv10028761m.g Eutrema salsugineum Thhalv10028761m.g I
PK07494.1 Cannabis sativa PK07494.1 I
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I
PDK_20s1310372g001 Phoenix dactylifera PDK_20s1310372g001 I
PDK_20s1349941g001 Phoenix dactylifera PDK_20s1349941g001 I
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I
PDK_20s1568831g001 Phoenix dactylifera PDK_20s1568831g001 I
PDK_20s1708971g001 Phoenix dactylifera PDK_20s1708971g001 I