Bo5g051970 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo5g051970 T322440_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.987 0.920
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.969 0.893
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.969 0.893
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g051970.1 SBP 163 237

Links

Other SBP family TFs
Other Brassica oleracea TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RBPJ Homo sapiens ENSG00000168214 D
NECAME_17145 Necator americanus NECAME_17145 I
TRE_0000568701 Trichobilharzia regenti TRE_0000568701 I
SMUV_0001013801 Syphacia muris SMUV_0001013801 I
SMTD_0001089601 Schistosoma mattheei SMTD_0001089601 I
SMRZ_0000802101 Schistosoma margrebowiei SMRZ_0000802101 I
SCUD_0000326701 Schistosoma curassoni SCUD_0000326701 I
scaffold595-EXSNAP2012.9 Pristionchus exspectatus scaffold595-EXSNAP2012.9 I
GPLIN_001569000 Globodera pallida GPLIN_001569000 I
D915_08967 Fasciola hepatica D915_08967 I
BTMF_0000608501 Brugia timori BTMF_0000608501 I
BTMF_0000429201 Brugia timori BTMF_0000429201 I
augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 I
Sjc_0108400 Schistosoma japonicum Sjc_0108400 I
HHAL001644-PA Halyomorpha halys HHAL001644-PA I
PPA16711 Pristionchus pacificus PPA16711 I
ENSVPAG00000005031 Vicugna pacos ENSVPAG00000005031 I
PTRK_0000010500 Parastrongyloides trichosuri PTRK_0000010500 N
SPAL_0001149300 Strongyloides papillosus SPAL_0001149300 N
SSTP_0000504800 Strongyloides stercoralis SSTP_0000504800 N
SVE_1985500 Strongyloides venezuelensis SVE_1985500 N