MTR_2g078770 (Medicago truncatula)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 MTR_2g078770 T322733_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.931 0.747
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.929 0.733
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.928 0.773
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.921 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.921 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.921 0.707
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.919 0.693
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.916 0.747
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.914 0.747
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.914 0.747
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.914 0.747
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.911 0.693
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.903 0.707
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.901 0.733
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.897 0.733
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.897 0.733
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.897 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH38697 SBP 58 132

Links

Other SBP family TFs
Other Medicago truncatula TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-142 Caenorhabditis elegans WBGene00018430 D
L898_g12799 Steinernema monticolum L898_g12799 I
L889_g6799 Steinernema feltiae L889_g6799 I
L889_g6804 Steinernema feltiae L889_g6804 I
CBG09320 Caenorhabditis briggsae CBG09320 I
L889_g8187 Steinernema feltiae L889_g8187 I
L892_g10842 Steinernema scapterisci L892_g10842 I
L892_g10843 Steinernema scapterisci L892_g10843 I
L892_g14817 Steinernema scapterisci L892_g14817 I
L892_g14818 Steinernema scapterisci L892_g14818 I
L892_g2780 Steinernema scapterisci L892_g2780 I
L892_g2781 Steinernema scapterisci L892_g2781 I
L892_g2782 Steinernema scapterisci L892_g2782 I
L893_g18992 Steinernema glaseri L893_g18992 I
L893_g18993 Steinernema glaseri L893_g18993 I
L889_g8185 Steinernema feltiae L889_g8185 I
L898_g19012 Steinernema monticolum L898_g19012 I
L898_g19014 Steinernema monticolum L898_g19014 I
L898_g19019 Steinernema monticolum L898_g19019 I
L898_g21763 Steinernema monticolum L898_g21763 I
L898_g3512 Steinernema monticolum L898_g3512 I
L898_g3514 Steinernema monticolum L898_g3514 I
L898_g3515 Steinernema monticolum L898_g3515 I
L898_g4012 Steinernema monticolum L898_g4012 I
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I
CBN21486 Caenorhabditis brenneri CBN21486 I
HCOI01190000 Haemonchus contortus HCOI01190000 I
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I
CRE31070 Caenorhabditis remanei CRE31070 I
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I
L596_g14532 Steinernema carpocapsae L596_g14532 I
L596_g14533 Steinernema carpocapsae L596_g14533 I
L596_g14536 Steinernema carpocapsae L596_g14536 I
L889_g6798 Steinernema feltiae L889_g6798 I
L596_g14537 Steinernema carpocapsae L596_g14537 I
L596_g14588 Steinernema carpocapsae L596_g14588 I
L596_g14589 Steinernema carpocapsae L596_g14589 I
L596_g14590 Steinernema carpocapsae L596_g14590 I
L596_g14596 Steinernema carpocapsae L596_g14596 I
L889_g6692 Steinernema feltiae L889_g6692 I
L889_g6694 Steinernema feltiae L889_g6694 I
CJA28065 Caenorhabditis japonica CJA28065 I
L889_g6695 Steinernema feltiae L889_g6695 I
L889_g6696 Steinernema feltiae L889_g6696 I
CBN28290 Caenorhabditis brenneri CBN28290 I
L889_g6792 Steinernema feltiae L889_g6792 I
L898_g4018 Steinernema monticolum L898_g4018 N
L898_g4016 Steinernema monticolum L898_g4016 N
L898_g4015 Steinernema monticolum L898_g4015 N
L893_g27943 Steinernema glaseri L893_g27943 N
L898_g2944 Steinernema monticolum L898_g2944 N
L898_g2943 Steinernema monticolum L898_g2943 N
L893_g27935 Steinernema glaseri L893_g27935 N
L596_g14541 Steinernema carpocapsae L596_g14541 N
L596_g14578 Steinernema carpocapsae L596_g14578 N
L892_g10840 Steinernema scapterisci L892_g10840 N
L889_g6806 Steinernema feltiae L889_g6806 N
L889_g6803 Steinernema feltiae L889_g6803 N