Sb07g004340 (Sorghum bicolor)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 Sb07g004340 T323972_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Sb07g004340.1 Sigma 70 261 331

Links

Other Sigma 70 family TFs
Other Sorghum bicolor TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.789
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.817
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.817
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.803
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.775
mgf016433m Mimulus guttatus mgf016433m N 0.775
mgf004750m Mimulus guttatus mgf004750m N 0.775
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.789
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.775
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.789
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.789
30148.m001468 Ricinus communis 30148.m001468 N 0.803
Pm019567 Prunus mume Pm019567 N 0.803
Cla006897 Citrullus lanatus Cla006897 N 0.789
Ca_22625 Cicer arietinum Ca_22625 N 0.803
Ca_22622 Cicer arietinum Ca_22622 N 0.789
SIGA Vitis vinifera VIT_16s0039g00660 N 0.789
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.958
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.958
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.986
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.817
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.789
PK03826.1 Cannabis sativa PK03826.1 N 0.803
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.803
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.803
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.803
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.775
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.972
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.964
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.775
MDP0000939377 Malus domestica MDP0000939377 N 0.831
MDP0000934360 Malus domestica MDP0000934360 N 0.831
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.775
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.789
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.831
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.803
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.775
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.930
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.958
OBART08G03910 Oryza barthii OBART08G03910 N 0.958
OB08G14150 Oryza brachyantha OB08G14150 N 0.972
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.789
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.972
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.817
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.789
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.958
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.958
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.803
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.803
F775_32229 Aegilops tauschii F775_32229 N 0.958
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.944
Bra008513 Brassica rapa Bra008513 N 0.803
Bo2g097550 Brassica oleracea Bo2g097550 N 0.803
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.958
SIGA Arabidopsis thaliana AT1G64860 N 0.817
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.761
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.958
TCM_025640 Theobroma cacao TCM_025640 N 0.775
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.817
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.761
Si013608m.g Setaria italica Si013608m.g N 0.972
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.817
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.803
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.817
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.817
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.817
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.761
OS08G0163400 Oryza sativa OS08G0163400 N 0.958
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.958
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.958
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.958
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.958
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.958