SIGA (Arabidopsis lyrata)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 scaffold_200883.1 T323976_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_200883.1 Sigma 70 264 334

Links

Other Sigma 70 family TFs
Other Arabidopsis lyrata TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.930
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.901
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 1.000
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 1.000
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.986
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.901
mgf016433m Mimulus guttatus mgf016433m N 0.873
mgf015154m Mimulus guttatus mgf015154m N 0.732
mgf004750m Mimulus guttatus mgf004750m N 0.873
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.944
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.958
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.944
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.944
30148.m001468 Ricinus communis 30148.m001468 N 0.958
Pm019567 Prunus mume Pm019567 N 0.930
Cla006897 Citrullus lanatus Cla006897 N 0.944
Ca_22625 Cicer arietinum Ca_22625 N 0.930
Ca_22622 Cicer arietinum Ca_22622 N 0.915
SIGA Vitis vinifera VIT_16s0039g00660 N 0.944
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.831
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.915
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.944
PK03826.1 Cannabis sativa PK03826.1 N 0.958
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.986
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.930
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.930
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.901
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.817
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.831
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.915
MDP0000939377 Malus domestica MDP0000939377 N 0.901
MDP0000934360 Malus domestica MDP0000934360 N 0.901
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.775
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.930
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.930
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.901
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.958
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.845
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.817
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.817
OBART08G03910 Oryza barthii OBART08G03910 N 0.817
OB08G14150 Oryza brachyantha OB08G14150 N 0.817
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.915
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.845
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.915
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.831
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.803
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.817
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.944
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.944
F775_32229 Aegilops tauschii F775_32229 N 0.831
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.817
Bra008513 Brassica rapa Bra008513 N 0.986
Bo2g097550 Brassica oleracea Bo2g097550 N 0.986
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.817
SIGA Arabidopsis thaliana AT1G64860 N 1.000
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.944
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.831
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.831
TCM_025640 Theobroma cacao TCM_025640 N 0.930
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.887
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.887
Si013608m.g Setaria italica Si013608m.g N 0.817
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.817
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.930
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.873
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.887
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.887
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.887
OS08G0163400 Oryza sativa OS08G0163400 N 0.817
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.817
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.817
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.817
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.817