SIGA (Vitis vinifera)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 VIT_16s0039g00660 T324042_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_16s0039g00660.t01 Sigma 70 339 409

Links

Other Sigma 70 family TFs
Other Vitis vinifera TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.972
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.944
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.944
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.958
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.958
mgf016433m Mimulus guttatus mgf016433m N 0.930
mgf015154m Mimulus guttatus mgf015154m N 0.775
mgf004750m Mimulus guttatus mgf004750m N 0.930
Cucsa.073340 Cucumis sativus Cucsa.073340 N 1.000
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.986
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.958
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.972
30148.m001468 Ricinus communis 30148.m001468 N 0.986
Pm019567 Prunus mume Pm019567 N 0.986
Cla006897 Citrullus lanatus Cla006897 N 1.000
Ca_22625 Cicer arietinum Ca_22625 N 0.986
Ca_22622 Cicer arietinum Ca_22622 N 0.972
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.775
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.775
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.972
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.944
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 1.000
PK03826.1 Cannabis sativa PK03826.1 N 0.986
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.958
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.958
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.958
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.958
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.817
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.803
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.764
MDP0000939377 Malus domestica MDP0000939377 N 0.958
MDP0000934360 Malus domestica MDP0000934360 N 0.958
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.829
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.958
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.944
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.958
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.986
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.986
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.803
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.817
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.817
OBART08G03910 Oryza barthii OBART08G03910 N 0.817
OB08G14150 Oryza brachyantha OB08G14150 N 0.817
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.958
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.817
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.887
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.873
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.775
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.817
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.958
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.958
F775_32229 Aegilops tauschii F775_32229 N 0.775
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.775
Bra008513 Brassica rapa Bra008513 N 0.958
Bo2g097550 Brassica oleracea Bo2g097550 N 0.958
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.817
SIGA Arabidopsis thaliana AT1G64860 N 0.944
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.972
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.775
TCM_025640 Theobroma cacao TCM_025640 N 0.958
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.915
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.944
Si013608m.g Setaria italica Si013608m.g N 0.817
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.944
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.789
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.986
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.930
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.944
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.915
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.944
OS08G0163400 Oryza sativa OS08G0163400 N 0.817
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.817
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.817
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.817
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.817