Carubv10020145m.g (Capsella rubella)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Carubv10020145m.g T324165_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020145m Sigma 70 282 352
Carubv10020253m Sigma 70 283 353
Carubv10020255m Sigma 70 283 353

Links

Other Sigma 70 family TFs
Other Capsella rubella TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.944
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 1.000
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.986
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.901
mgf016433m Mimulus guttatus mgf016433m N 0.873
mgf015154m Mimulus guttatus mgf015154m N 0.732
mgf004750m Mimulus guttatus mgf004750m N 0.873
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.944
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.930
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.901
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.944
30148.m001468 Ricinus communis 30148.m001468 N 0.958
Pm019567 Prunus mume Pm019567 N 0.930
Cla006897 Citrullus lanatus Cla006897 N 0.944
Ca_22625 Cicer arietinum Ca_22625 N 0.930
Ca_22622 Cicer arietinum Ca_22622 N 0.915
SIGA Vitis vinifera VIT_16s0039g00660 N 0.944
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.831
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.915
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.915
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.944
PK03826.1 Cannabis sativa PK03826.1 N 0.958
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.986
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.930
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.930
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.901
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.817
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.831
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.831
MDP0000939377 Malus domestica MDP0000939377 N 0.901
MDP0000934360 Malus domestica MDP0000934360 N 0.901
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.775
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.930
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.930
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.901
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.958
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.958
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.845
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.817
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.817
OBART08G03910 Oryza barthii OBART08G03910 N 0.817
OB08G14150 Oryza brachyantha OB08G14150 N 0.817
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.915
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.845
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.915
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.831
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.803
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.817
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.944
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.944
F775_32229 Aegilops tauschii F775_32229 N 0.831
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.817
Bra008513 Brassica rapa Bra008513 N 0.986
Bo2g097550 Brassica oleracea Bo2g097550 N 0.986
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.817
SIGA Arabidopsis thaliana AT1G64860 N 1.000
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.944
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.831
TCM_025640 Theobroma cacao TCM_025640 N 0.930
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.887
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.887
Si013608m.g Setaria italica Si013608m.g N 0.817
SIGA Arabidopsis lyrata scaffold_200883.1 N 1.000
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.817
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.930
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.873
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.887
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.887
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.887
OS08G0163400 Oryza sativa OS08G0163400 N 0.817
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.817
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.817
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.817
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.817