gene12547-v1.0-hybrid (Fragaria vesca)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 gene12547-v1.0-hybrid T324188_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna12547.1-v1.0-hybrid Sigma 70 272 342

Links

Other Sigma 70 family TFs
Other Fragaria vesca TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.930
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.901
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.901
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.915
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.915
mgf016433m Mimulus guttatus mgf016433m N 0.915
mgf015154m Mimulus guttatus mgf015154m N 0.761
mgf004750m Mimulus guttatus mgf004750m N 0.915
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.958
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.944
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.958
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.930
30148.m001468 Ricinus communis 30148.m001468 N 0.944
Pm019567 Prunus mume Pm019567 N 0.972
Cla006897 Citrullus lanatus Cla006897 N 0.958
Ca_22625 Cicer arietinum Ca_22625 N 0.972
Ca_22622 Cicer arietinum Ca_22622 N 0.958
SIGA Vitis vinifera VIT_16s0039g00660 N 0.958
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.817
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.845
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.930
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.958
PK03826.1 Cannabis sativa PK03826.1 N 0.944
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.915
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.915
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.915
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.915
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.859
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.817
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.944
MDP0000939377 Malus domestica MDP0000939377 N 0.944
MDP0000934360 Malus domestica MDP0000934360 N 0.944
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.775
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.944
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.930
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.944
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.944
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.817
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.859
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.859
OBART08G03910 Oryza barthii OBART08G03910 N 0.859
OB08G14150 Oryza brachyantha OB08G14150 N 0.859
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.944
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.859
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.873
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.887
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.817
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.859
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.915
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.915
F775_32229 Aegilops tauschii F775_32229 N 0.817
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.817
Bra008513 Brassica rapa Bra008513 N 0.915
Bo2g097550 Brassica oleracea Bo2g097550 N 0.915
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.859
SIGA Arabidopsis thaliana AT1G64860 N 0.901
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.930
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.817
TCM_025640 Theobroma cacao TCM_025640 N 0.944
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.915
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.930
Si013608m.g Setaria italica Si013608m.g N 0.859
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.901
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.831
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.972
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.915
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.901
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.915
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.930
OS08G0163400 Oryza sativa OS08G0163400 N 0.859
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.859
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.859
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.859
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.859