Pavir.J05536 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.J05536 T324235_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J05536.1.p Sigma 70 333 401

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA05G29730 Oryza nivara ONIVA05G29730 N 0.870
Pavir.J02804 Panicum virgatum Pavir.J02804 N 1.000
TRIUR3_15558 Triticum urartu TRIUR3_15558 N 0.884
Traes_1DL_F23E9DAA9 Triticum aestivum Traes_1DL_F23E9DAA9 N 0.884
Traes_1BL_3E662FC82 Triticum aestivum Traes_1BL_3E662FC82 N 0.899
Traes_1AL_2F1278623 Triticum aestivum Traes_1AL_2F1278623 N 0.884
Si021619m.g Setaria italica Si021619m.g N 1.000
Sb09g030380 Sorghum bicolor Sb09g030380 N 0.875
Sb09g030350 Sorghum bicolor Sb09g030350 N 0.899
OS05G0589200 Oryza sativa OS05G0589200 N 0.870
ORUFI05G29710 Oryza rufipogon ORUFI05G29710 N 0.870
ORGLA05G0241100 Oryza glaberrima ORGLA05G0241100 N 0.870
OPUNC05G25360 Oryza punctata OPUNC05G25360 N 0.855
BGIOSGA020470 Oryza indica BGIOSGA020470 N 0.870
OMERI05G23660 Oryza meridionalis OMERI05G23660 N 0.870
OLONG_010405 Oryza longistaminata OLONG_010405 N 0.870
OGLUM05G29230 Oryza glumaepatula OGLUM05G29230 N 0.870
OBART05G27740 Oryza barthii OBART05G27740 N 0.870
OB05G35290 Oryza brachyantha OB05G35290 N 0.855
MLOC_12452 Hordeum vulgare MLOC_12452 N 0.910
LPERR05G23430 Leersia perrieri LPERR05G23430 N 0.884
GRMZM5G830932 Zea mays GRMZM5G830932 N 0.928
F775_05183 Aegilops tauschii F775_05183 N 0.884
BRADI2G14567 Brachypodium distachyon BRADI2G14567 N 0.896
BRADI2G14550 Brachypodium distachyon BRADI2G14550 N 0.928