ENSCING00000002528 (Ciona intestinalis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSCING00000002528 T324516_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.868 0.868
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.868 0.868
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.868 0.868
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.868 0.868
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.868 0.868
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.868 0.868
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.846 0.846
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.846 0.846
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.846 0.846
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.846 0.846
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.846 0.846
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.846 0.846
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.835 0.835
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.835 0.835
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.835 0.835
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.835 0.835
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.835 0.835
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.835 0.835
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.769 0.769
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.769 0.769
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.769 0.769
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.769 0.769
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.769 0.769
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.769 0.769
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.769 0.769
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.769 0.769
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.758 0.758
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.736 0.736
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000005158 SMAD 89 194

Links

Other SMAD family TFs
Other Ciona intestinalis TFs

330 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf023930m Mimulus guttatus mgf023930m N 0.000
evm.TU.supercontig_30.61 Carica papaya evm.TU.supercontig_30.61 N 0.000
Eucgr.A01594 Eucalyptus grandis Eucgr.A01594 N 0.000
Ciclev10030107m.g Citrus clementina Ciclev10030107m.g N 0.000
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N 0.000
Carubv10024278m.g Capsella rubella Carubv10024278m.g N 0.000
Cagra.15046s0001 Capsella grandiflora Cagra.15046s0001 N 0.000
Bostr.27991s0138 Boechera stricta Bostr.27991s0138 N 0.000
Aquca_009_01064 Aquilegia coerulea Aquca_009_01064 N 0.000
evm.TU.supercontig_5.128 Carica papaya evm.TU.supercontig_5.128 N 0.000
mgf013167m Mimulus guttatus mgf013167m N 0.000
mgf006916m Mimulus guttatus mgf006916m N 0.000
Cucsa.378840 Cucumis sativus Cucsa.378840 N 0.000
Cucsa.200310 Cucumis sativus Cucsa.200310 N 0.000
cassava9017.m1 Manihot esculenta cassava9017.m1 N 0.000
cassava37607.valid.m1 Manihot esculenta cassava37607.valid.m1 N 0.000
cassava28497.m1 Manihot esculenta cassava28497.m1 N 0.000
30078.m002228 Ricinus communis 30078.m002228 N 0.000
Lus10030968.g Linum usitatissimum Lus10030968.g N 0.000
PK29286.1 Cannabis sativa PK29286.1 N 0.000
SapurV1A.0360s0060 Salix purpurea SapurV1A.0360s0060 N 0.000
SapurV1A.0288s0160 Salix purpurea SapurV1A.0288s0160 N 0.000
SapurV1A.0226s0270 Salix purpurea SapurV1A.0226s0270 N 0.000
orange1.1g028583m.g Citrus sinensis orange1.1g028583m.g N 0.000
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N 0.000
Lus10040082.g Linum usitatissimum Lus10040082.g N 0.000
Lus10035554.g Linum usitatissimum Lus10035554.g N 0.000
30054.m000824 Ricinus communis 30054.m000824 N 0.000
Lus10027735.g Linum usitatissimum Lus10027735.g N 0.000
Lus10004577.g Linum usitatissimum Lus10004577.g N 0.000
Lus10000482.g Linum usitatissimum Lus10000482.g N 0.000
Gorai.009G411100 Gossypium raimondii Gorai.009G411100 N 0.000
Gorai.006G159900 Gossypium raimondii Gorai.006G159900 N 0.000
Gorai.001G117900 Gossypium raimondii Gorai.001G117900 N 0.000
gene00954-v1.0-hybrid Fragaria vesca gene00954-v1.0-hybrid N 0.000
GSMUA_AchrUn_randomG07560_001 Musa acuminata GSMUA_AchrUn_randomG07560_001 N 0.000
ORUFI08G26100 Oryza rufipogon ORUFI08G26100 N 0.000
ORGLA08G0190300 Oryza glaberrima ORGLA08G0190300 N 0.000
ONIVA08G26670 Oryza nivara ONIVA08G26670 N 0.000
OMERI08G18450 Oryza meridionalis OMERI08G18450 N 0.000
OLONG_020563 Oryza longistaminata OLONG_020563 N 0.000
OGLUM08G25080 Oryza glumaepatula OGLUM08G25080 N 0.000
OBART08G23610 Oryza barthii OBART08G23610 N 0.000
MTR_7g102790 Medicago truncatula MTR_7g102790 N 0.000
OS08G0560300 Oryza sativa OS08G0560300 N 0.000
GSMUA_Achr7G04460_001 Musa acuminata GSMUA_Achr7G04460_001 N 0.000
GRMZM2G171934 Zea mays GRMZM2G171934 N 0.000
GRMZM2G086403 Zea mays GRMZM2G086403 N 0.000
GLYMA19G37220 Glycine max GLYMA19G37220 N 0.000
GLYMA13G21140 Glycine max GLYMA13G21140 N 0.000
GLYMA12G08810 Glycine max GLYMA12G08810 N 0.000
GLYMA10G07240 Glycine max GLYMA10G07240 N 0.000
Bra034379 Brassica rapa Bra034379 N 0.000
Solyc10g085800.1 Solanum lycopersicum Solyc10g085800.1 N 0.000
29589.m001281 Ricinus communis 29589.m001281 N 0.000
Cla001071 Citrullus lanatus Cla001071 N 0.000
Ca_19047 Cicer arietinum Ca_19047 N 0.000
Ca_17446 Cicer arietinum Ca_17446 N 0.000
Ca_00735 Cicer arietinum Ca_00735 N 0.000
VIT_08s0007g04560 Vitis vinifera VIT_08s0007g04560 N 0.000
TCM_041560 Theobroma cacao TCM_041560 N 0.000
TCM_022356 Theobroma cacao TCM_022356 N 0.000
BGIOSGA026486 Oryza indica BGIOSGA026486 N 0.000
Sb07g024020 Sorghum bicolor Sb07g024020 N 0.000
POPTR_0016s10920 Populus trichocarpa POPTR_0016s10920 N 0.000
POPTR_0009s00830 Populus trichocarpa POPTR_0009s00830 N 0.000
POPTR_0003s09160 Populus trichocarpa POPTR_0003s09160 N 0.000
POPTR_0001s21990 Populus trichocarpa POPTR_0001s21990 N 0.000
POPTR_0001s02390 Populus trichocarpa POPTR_0001s02390 N 0.000
PGSC0003DMG400008598 Solanum tuberosum PGSC0003DMG400008598 N 0.000