Nfia (Dipodomys ordii)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSDORG00000005150 T324580_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		1.000 1.000
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		1.000 1.000
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		1.000 1.000
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		1.000 1.000
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		1.000 1.000
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		1.000 1.000
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.934 0.934
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.934 0.934
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.934 0.934
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.934 0.934
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.934 0.934
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.934 0.934
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.934 0.934
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.934 0.934
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.934 0.934
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.934 0.934
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.934 0.934
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.934 0.934
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.868 0.868
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.857 0.857
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.857 0.857
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.857 0.857
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.857 0.857
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.857 0.857
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.857 0.857
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.857 0.857
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.857 0.857
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000004817 SMAD 91 195

Links

Other SMAD family TFs
Other Dipodomys ordii TFs

362 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RELB Homo sapiens ENSG00000104856 D 0.000
Relb Mus musculus ENSMUSG00000002983 D 0.000
RELB Monodelphis domestica ENSMODG00000020855 I 0.000
ENSBTAP00000049624-D1 Bos grunniens ENSBTAP00000049624-D1 I 0.000
RELB Tursiops truncatus ENSTTRG00000015217 I 0.000
ENSSTOG00000009056 Ictidomys tridecemlineatus ENSSTOG00000009056 I 0.000
Relb Rattus norvegicus ENSRNOG00000033235 I 0.000
RELB Pteropus vampyrus ENSPVAG00000015952 I 0.000
RELB Pan troglodytes ENSPTRG00000011133 I 0.000
ENSPPYG00000010103 Pongo abelii ENSPPYG00000010103 I 0.000
RELB Procavia capensis ENSPCAG00000010787 I 0.000
ENSPANG00000007219 Papio anubis ENSPANG00000007219 I 0.000
ENSOPRG00000014981 Ochotona princeps ENSOPRG00000014981 I 0.000
RELB Otolemur garnettii ENSOGAG00000012777 I 0.000
CLASRP Oryctolagus cuniculus ENSOCUG00000004711 I 0.000
ENSOARG00000009545 Ovis aries ENSOARG00000009545 I 0.000
Relb Dipodomys ordii ENSDORG00000003448 I 0.000
RELB Bos taurus ENSBTAG00000038428 I 0.000
RELB Canis familiaris ENSCAFG00000004597 I 0.000
RELB Callithrix jacchus ENSCJAG00000012991 I 0.000
RELB Cavia porcellus ENSCPOG00000010273 I 0.000
ENSCSAG00000003233 Chlorocebus sabaeus ENSCSAG00000003233 I 0.000
ENSDNOG00000032456 Dasypus novemcinctus ENSDNOG00000032456 I 0.000
ENSAMEG00000012673 Ailuropoda melanoleuca ENSAMEG00000012673 I 0.000
RELB Equus caballus ENSECAG00000020898 I 0.000
RELB Felis catus ENSFCAG00000025715 I 0.000
RELB Gorilla gorilla ENSGGOG00000003380 I 0.000
RELB Loxodonta africana ENSLAFG00000008071 I 0.000
RELB Microcebus murinus ENSMICG00000006991 I 0.000
RELB Myotis lucifugus ENSMLUG00000006593 I 0.000
RELB Macaca mulatta ENSMMUG00000014153 I 0.000
ENSSSCG00000027575 Sus scrofa ENSSSCG00000027575 N 0.000
Cmyd_10003369 Chelonia mydas Cmyd_10003369 N 0.000