Nfib (Mus musculus)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSMUSG00000008575 T324766_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfib
M09381_2.00		 Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		1.000 1.000
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		1.000 1.000
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.964 0.964
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		1.000 1.000
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		1.000 1.000
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.904 0.904
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.904 0.904
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.904 0.904
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.904 0.904
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.904 0.904
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.904 0.904
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.901 0.901
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.901 0.901
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.892 0.892
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.892 0.892
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.892 0.892
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.892 0.892
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.783 0.783
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.802 0.802
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.802 0.802
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.802 0.802
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.771 0.771
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.802 0.802
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.802 0.802
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.771 0.771
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.771 0.771
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000052863 SMAD 69 173
ENSMUSP00000067629 SMAD 69 173
ENSMUSP00000102865 SMAD 68 172
ENSMUSP00000102866 SMAD 68 172
ENSMUSP00000102868 SMAD 68 172
ENSMUSP00000102869 SMAD 68 172
ENSMUSP00000123169 SMAD 84 174

Links

Other SMAD family TFs
Other Mus musculus TFs

337 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M408DRAFT_208536 Serendipita vermifera M408DRAFT_208536 N 0.000
SVE_1799500 Strongyloides venezuelensis SVE_1799500 N 0.000
RSKR_0000997600 Rhabditophanes kr3021 RSKR_0000997600 N 0.000
PTRK_0000720200 Parastrongyloides trichosuri PTRK_0000720200 N 0.000
HNAJ_0000095701 Hymenolepis nana HNAJ_0000095701 N 0.000
MDOA009345 Musca domestica MDOA009345 N 0.000
chr2.CM0304.950.nc Lotus japonicus chr2.CM0304.950.nc N 0.000
LDEC010382 Leptinotarsa decemlineata LDEC010382 N 0.000
LCUP008086 Lucilia cuprina LCUP008086 N 0.000
Ocbimv22026989m.g Octopus bimaculoides Ocbimv22026989m.g N 0.000
e_gw1.317.1.1 Dictyostelium purpureum e_gw1.317.1.1 N 0.000
YQE_05996 Dendroctonus ponderosae YQE_05996 N 0.000
SMAR014515 Strigamia maritima SMAR014515 N 0.000
PIIN_02915 Piriformospora indica PIIN_02915 N 0.000
PHUM227240 Pediculus humanus PHUM227240 N 0.000
CapteG146844 Capitella teleta CapteG146844 N 0.000
LotgiG119273 Lottia gigantea LotgiG119273 N 0.000
GA25342 Drosophila pseudoobscura FBgn0246723 N 0.000
GE18962 Drosophila yakuba FBgn0236332 N 0.000
GK15405 Drosophila willistoni FBgn0217410 N 0.000
GD22615 Drosophila simulans FBgn0194016 N 0.000
GM17977 Drosophila sechellia FBgn0172884 N 0.000
GL19092 Drosophila persimilis FBgn0156692 N 0.000
GI11300 Drosophila mojavensis FBgn0134061 N 0.000
GH10714 Drosophila grimshawi FBgn0118195 N 0.000
GG24264 Drosophila erecta FBgn0116396 N 0.000
GF14289 Drosophila ananassae FBgn0091316 N 0.000
lid Drosophila melanogaster FBgn0031759 N 0.000
DAPPUDRAFT_46806 Daphnia pulex DAPPUDRAFT_46806 N 0.000