NFIX (Sus scrofa)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSSSCG00000013742 T324958_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		1.000 1.000
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		1.000 1.000
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		1.000 1.000
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		1.000 1.000
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		1.000 1.000
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		1.000 1.000
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.934 0.934
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.934 0.934
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.934 0.934
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.934 0.934
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.934 0.934
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.934 0.934
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.901 0.901
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.901 0.901
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.901 0.901
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.901 0.901
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.901 0.901
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.901 0.901
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.835 0.835
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.835 0.835
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.835 0.835
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.835 0.835
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.835 0.835
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.835 0.835
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.835 0.835
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.835 0.835
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.824 0.824
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000014611 SMAD 68 172

Links

Other SMAD family TFs
Other Sus scrofa TFs

355 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TEAD3 Homo sapiens ENSG00000007866 D 0.000
TEAD1 Homo sapiens ENSG00000187079 D 0.000
TEAD4 Homo sapiens ENSG00000197905 D 0.000
Tead4 Mus musculus ENSMUSG00000030353 D 0.000
Tead1 Mus musculus ENSMUSG00000055320 D 0.000
sd Drosophila melanogaster FBgn0003345 D 0.000
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I 0.000
AGAP000512 Anopheles gambiae AGAP000512 I 0.000
Aqu1.216869 Amphimedon queenslandica Aqu1.216869 I 0.000
BGIBMGA001129 Bombyx mori BGIBMGA001129 I 0.000
CBG02541 Caenorhabditis briggsae CBG02541 I 0.000
CPIJ013490 Culex quinquefasciatus CPIJ013490 I 0.000
EFV53558 Trichinella spiralis EFV53558 I 0.000
TEAD3 Canis familiaris ENSCAFG00000001326 I 0.000
TEAD1 Canis familiaris ENSCAFG00000007976 I 0.000
ENSCING00000019408 Ciona intestinalis ENSCING00000019408 I 0.000
TEAD1 Callithrix jacchus ENSCJAG00000010263 I 0.000
ENSCJAG00000018829 Callithrix jacchus ENSCJAG00000018829 I 0.000
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I 0.000
tead1a Danio rerio ENSDARG00000028159 I 0.000
tead1b Danio rerio ENSDARG00000059483 I 0.000
tead3b Danio rerio ENSDARG00000063649 I 0.000
TEAD4 Dasypus novemcinctus ENSDNOG00000030589 I 0.000
Tead3 Dipodomys ordii ENSDORG00000010798 I 0.000
TEAD1 Equus caballus ENSECAG00000008332 I 0.000
TEAD3 Equus caballus ENSECAG00000015056 I 0.000
ENSFALG00000003635 Ficedula albicollis ENSFALG00000003635 I 0.000
TEAD3 Felis catus ENSFCAG00000012905 I 0.000
tead3a Gasterosteus aculeatus ENSGACG00000009758 I 0.000
tead1b Gasterosteus aculeatus ENSGACG00000015715 I 0.000
ENSGALG00000000953 Gallus gallus ENSGALG00000000953 I 0.000
TEAD3 Gorilla gorilla ENSGGOG00000001847 I 0.000
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I 0.000
ENSLACG00000016444 Latimeria chalumnae ENSLACG00000016444 I 0.000
TEAD3 Loxodonta africana ENSLAFG00000014818 I 0.000
ENSLOCG00000004054 Lepisosteus oculatus ENSLOCG00000004054 I 0.000
ENSLOCG00000009736 Lepisosteus oculatus ENSLOCG00000009736 I 0.000
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I 0.000
TEAD3 Microcebus murinus ENSMICG00000000029 I 0.000
TEAD1 Microcebus murinus ENSMICG00000007178 I 0.000
TEAD4 Macaca mulatta ENSMMUG00000011299 I 0.000
TEAD3 Macaca mulatta ENSMMUG00000015909 I 0.000
ENSNLEG00000008666 Nomascus leucogenys ENSNLEG00000008666 I 0.000
ENSOARG00000012126 Ovis aries ENSOARG00000012126 I 0.000
TEAD3 Otolemur garnettii ENSOGAG00000002943 I 0.000
TEAD4 Oryzias latipes ENSORLG00000002553 I 0.000
ENSPANG00000018522 Papio anubis ENSPANG00000018522 I 0.000
ENSPFOG00000003170 Poecilia formosa ENSPFOG00000003170 I 0.000
ENSPFOG00000013997 Poecilia formosa ENSPFOG00000013997 I 0.000
ENSPPYG00000003475 Pongo abelii ENSPPYG00000003475 I 0.000
ENSPSIG00000006176 Pelodiscus sinensis ENSPSIG00000006176 I 0.000
TEAD3 Pan troglodytes ENSPTRG00000018086 I 0.000
TEAD3 Pteropus vampyrus ENSPVAG00000002764 I 0.000
ENSSHAG00000015930 Sarcophilus harrisii ENSSHAG00000015930 I 0.000
TEAD1 Sus scrofa ENSSSCG00000013399 I 0.000
TEAD3 Taeniopygia guttata ENSTGUG00000001691 I 0.000
tead1a Takifugu rubripes ENSTRUG00000005940 I 0.000
tead3a Takifugu rubripes ENSTRUG00000011546 I 0.000
TEAD4 Takifugu rubripes ENSTRUG00000016489 I 0.000
TEAD3 Tursiops truncatus ENSTTRG00000009434 I 0.000
GL22923 Drosophila persimilis FBgn0160513 I 0.000
GM22588 Drosophila sechellia FBgn0177458 I 0.000
HelroG146479 Helobdella robusta HelroG146479 I 0.000
NEMVEDRAFT_v1g86806 Nematostella vectensis NEMVEDRAFT_v1g86806 I 0.000
SMAR011013 Strigamia maritima SMAR011013 I 0.000
egl-44 Caenorhabditis elegans WBGene00001208 I 0.000
Alligator_sinensis_CCG011289.1 Alligator sinensis Alligator_sinensis_CCG011289.1 I 0.000
Alligator_sinensis_CCG020461.1 Alligator sinensis Alligator_sinensis_CCG020461.1 I 0.000
Cmyd_10009267 Chelonia mydas Cmyd_10009267 I 0.000
Ogr18322 Ophisaurus gracilis Ogr18322 I 0.000
Pvit_05988 Pogona vitticeps Pvit_05988 I 0.000
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I 0.000
HHAL001589-PA Halyomorpha halys HHAL001589-PA I 0.000
LCUP007338 Lucilia cuprina LCUP007338 I 0.000
ACHR008952 Anopheles christyi ACHR008952 I 0.000
AEPI008594 Anopheles epiroticus AEPI008594 I 0.000
AMEM005509 Anopheles merus AMEM005509 I 0.000
AQUA008219 Anopheles quadriannulatus AQUA008219 I 0.000
MDOA005382 Musca domestica MDOA005382 I 0.000
PPAI001408 Phlebotomus papatasi PPAI001408 I 0.000
D915_00206 Fasciola hepatica D915_00206 I 0.000
D917_06432 Trichinella nativa D917_06432 I 0.000
D918_02241 Trichuris suis D918_02241 I 0.000
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I 0.000
NBR_0001654801 Nippostrongylus brasiliensis NBR_0001654801 I 0.000
NBR_0002152001 Nippostrongylus brasiliensis NBR_0002152001 I 0.000
SMRZ_0002317401 Schistosoma margrebowiei SMRZ_0002317401 I 0.000
SMTD_0001953201 Schistosoma mattheei SMTD_0001953201 I 0.000
SROB_0002407501 Schistosoma rodhaini SROB_0002407501 I 0.000
TsM_000210300 Taenia solium TsM_000210300 I 0.000
ENSAPLG00000016417 Anas platyrhynchos ENSAPLG00000016417 N 0.000
TEAD1 Bos taurus ENSBTAG00000032657 N 0.000
TEAD1 Cavia porcellus ENSCPOG00000001830 N 0.000
TEAD1 Echinops telfairi ENSETEG00000009056 N 0.000
ENSLACG00000016717 Latimeria chalumnae ENSLACG00000016717 N 0.000
TEAD1 Macaca mulatta ENSMMUG00000010875 N 0.000
ENSNLEG00000017672 Nomascus leucogenys ENSNLEG00000017672 N 0.000
TEAD2 Ornithorhynchus anatinus ENSOANG00000013933 N 0.000
ENSOANG00000021775 Ornithorhynchus anatinus ENSOANG00000021775 N 0.000
TEAD1 Pan troglodytes ENSPTRG00000039896 N 0.000
TEAD1 Sorex araneus ENSSARG00000001748 N 0.000
TEAD1 Taeniopygia guttata ENSTGUG00000015995 N 0.000
ENSTSYG00000001514 Tarsius syrichta ENSTSYG00000001514 N 0.000
TEAD1 Tursiops truncatus ENSTTRG00000006621 N 0.000
Aan_R006597 Calypte anna Aan_R006597 N 0.000
Afo_R014607 Aptenodytes forsteri Afo_R014607 N 0.000
ENSP00000355332 Macaca fascicularis ENSP00000355332 N 0.000
Gfo_R013616 Geospiza fortis Gfo_R013616 N 0.000
Pvit_10291 Pogona vitticeps Pvit_10291 N 0.000
tead1.S Xenopus laevis XB-GENE-5909161 N 0.000