GPUH_0002149301 (Gongylonema pulchrum)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 GPUH_0002149301 T325691_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mad
M06446_2.00 		Drosophila melanogaster
GYGHCGBCVS
SBGVCGDCRC		 B1H
Zhu et al.(2011)
Mad_FlyReg_FBgn0011648 		0.765 0.765
Mad
M08427_2.00 		Drosophila melanogaster
SNGRCGMSRVSRBNS
SNVYSBYSKCGYCNS		 ChIP-chip
Mathelier et al.(2014)
MA0535.1 		0.765 0.765
Mad
M09692_2.00 		Drosophila melanogaster
KCBGSHGKCGCSNC
GNSGCGMCDSCVGM		 Misc
Kulakovskiy et al.(2009)
Mad 		0.765 0.765
Mad
M11293_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$MAD_Q6 		0.765 0.765
Smad5
M11288_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_01 		0.755 0.755
Smad5
M11292_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_03 		0.755 0.755
SMAD9
M11274_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_01 		0.755 0.755
Smad9
M11290_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_02 		0.755 0.755
Smad9
M11289_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_03 		0.755 0.755
SMAD1
M11286_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_01 		0.745 0.745
SMAD1
M11287_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_Q6 		0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPUH_0002149301-mRNA-1 SMAD 2 106

Links

Other SMAD family TFs
Other Gongylonema pulchrum TFs

380 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PTRK_0001095200 Parastrongyloides trichosuri PTRK_0001095200 N
L596_g148 Steinernema carpocapsae L596_g148 N
L889_g31190 Steinernema feltiae L889_g31190 N
L893_g14515 Steinernema glaseri L893_g14515 N
L898_g33187 Steinernema monticolum L898_g33187 N
maker-nMf.1.1.scaf01187-augustus-gene-0.14 Meloidogyne floridensis maker-nMf.1.1.scaf01187-augustus-gene-0.14 N
nAv.1.0.1.g08576 Acanthocheilonema viteae nAv.1.0.1.g08576 N
nDi.2.2.2.g00913 Dirofilaria immitis nDi.2.2.2.g00913 N
nLs.2.1.2.g06387 Litomosoides sigmodontis nLs.2.1.2.g06387 N
nOo.2.0.1.g07401 Onchocerca ochengi nOo.2.0.1.g07401 N
OFLC_0000734201 Onchocerca flexuosa OFLC_0000734201 N
HPLM_0000886801 Haemonchus placei HPLM_0000886801 N
RSKR_0000509700 Rhabditophanes kr3021 RSKR_0000509700 N
scaffold1066-EXSNAP2012.3 Pristionchus exspectatus scaffold1066-EXSNAP2012.3 N
SMUV_0000429701 Syphacia muris SMUV_0000429701 N
SPAL_0000243500 Strongyloides papillosus SPAL_0000243500 N
SSTP_0000993700 Strongyloides stercoralis SSTP_0000993700 N
SVE_0001100 Strongyloides venezuelensis SVE_0001100 N
TCLT_0000997101 Thelazia callipaeda TCLT_0000997101 N
TCNE_0000151101 Toxocara canis TCNE_0000151101 N
TCNE_0000252101 Toxocara canis TCNE_0000252101 N
ACOC_0000909601 Angiostrongylus costaricensis ACOC_0000909601 N
Bm4196 Brugia malayi Bm4196 N
CBG14076 Caenorhabditis briggsae CBG14076 N
CBN28426 Caenorhabditis brenneri CBN28426 N
CJA16887 Caenorhabditis japonica CJA16887 N
CRE00936 Caenorhabditis remanei CRE00936 N
LOAG_16508 Loa loa LOAG_16508 N
Ppa-npax-4 Pristionchus pacificus PPA03062 N
npax-2 Caenorhabditis elegans WBGene00018591 N
WBGene00239907 Onchocerca volvulus WBGene00239907 N
WUBG_05014 Wuchereria bancrofti WUBG_05014 N
ALUE_0000006201 Ascaris lumbricoides ALUE_0000006201 N
ASIM_0001061401 Anisakis simplex ASIM_0001061401 N
ASU_13814 Ascaris suum ASU_13814 N
BTMF_0001047601 Brugia timori BTMF_0001047601 N
BTMF_0001685601 Brugia timori BTMF_0001685601 N
DICVIV_06612 Dictyocaulus viviparus DICVIV_06612 N
EVEC_0001355301 Enterobius vermicularis EVEC_0001355301 N
GPLIN_001118300 Globodera pallida GPLIN_001118300 N
HCOI00419700 Haemonchus contortus HCOI00419700 N