BBX (Meleagris gallopavo)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSMGAG00000014384 T328339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.741 0.986
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.741 0.986
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.708 0.971
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.519 0.609
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.468 0.580
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.430 0.493
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.429 0.478
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000015219 Sox 80 148

Links

Other Sox family TFs
Other Meleagris gallopavo TFs

284 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASR3 Arabidopsis thaliana AT2G33550 D
Cucsa.349220 Cucumis sativus Cucsa.349220 I
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I
mgf009760m Mimulus guttatus mgf009760m I
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I
Carubv10023675m.g Capsella rubella Carubv10023675m.g I
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I
AMTR_s00025p00072580 Amborella trichopoda AMTR_s00025p00072580 I
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I
30128.m008552 Ricinus communis 30128.m008552 I
Pm024597 Prunus mume Pm024597 I
Cla001502 Citrullus lanatus Cla001502 I
VIT_17s0000g00270 Vitis vinifera VIT_17s0000g00270 I
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I
Bra021860 Brassica rapa Bra021860 I
Bra005486 Brassica rapa Bra005486 I
Bo4g182020 Brassica oleracea Bo4g182020 I
Bo4g043600 Brassica oleracea Bo4g043600 I
TCM_014751 Theobroma cacao TCM_014751 N