H101_01550 (Trichophyton interdigitale)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 H101_01550 T330482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN

NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.484 0.493
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS

SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.484 0.493
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN

NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.484 0.493
ROX1
M11346_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.484 0.493
ROX1
M11347_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.484 0.493
Sox15
M00202_2.00
Mus musculus
WTTVWNNNN

NNNNWBAAW
PBM
Badis et al.(2009)
Sox15_3457
0.463 0.377
SOX15
M03508_2.00
Homo sapiens
AACAATAMCATTGTT

AACAATGKTATTGTT
SELEX
Jolma et al.(2013)
SOX15_1
0.463 0.377
SOX15
M03509_2.00
Homo sapiens
ATCAATAMCATTGAT

ATCAATGKTATTGAT
SELEX
Jolma et al.(2013)
SOX15_2
0.463 0.377
SOX15
M03510_2.00
Homo sapiens
ATGAATAACATTCAT

ATGAATGTTATTCAT
SELEX
Jolma et al.(2013)
SOX15_3
0.463 0.377
SOX15
M05893_2.00
Homo sapiens
YYWTTGTNHN

NDNACAAWRR
SMiLE-seq
Isakova et al.(2017)
SOX15
0.463 0.377
SOX15
M11308_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX15_Q3
0.463 0.377
SRY
M03525_2.00
Homo sapiens
AACAATANCATTGTT

AACAATGNTATTGTT
SELEX
Jolma et al.(2013)
SRY_1
0.443 0.391
SRY
M03526_2.00
Homo sapiens
AACAATHHNCATTGTT

AACAATGNDDATTGTT
SELEX
Jolma et al.(2013)
SRY_2
0.443 0.391
SRY
M03527_2.00
Homo sapiens
TCAATAMCATTGA

TCAATGKTATTGA
SELEX
Jolma et al.(2013)
SRY_3
0.443 0.391
SRY
M03528_2.00
Homo sapiens
TGAATANCATTCA

TGAATGNTATTCA
SELEX
Jolma et al.(2013)
SRY_4
0.443 0.391
SRY
M05898_2.00
Homo sapiens
NACAATNV

BNATTGTN
SMiLE-seq
Isakova et al.(2017)
SRY
0.443 0.391
SRY
M02717_2.00
Homo sapiens
NDWAACAAW

WTTGTWWHN
SELEX
Mathelier et al.(2014)
MA0084.1
0.443 0.391
SRY
M09398_2.00
Homo sapiens
BWTTGTTWH

DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_HUMAN.H11MO.0.B
0.443 0.391
SRY
M11331_2.00
Homo sapiens
AAWSWMM

KKWSWTT
Transfac
Matys et al.(2006)
V$SRY_01
0.443 0.391
SRY
M11332_2.00
Homo sapiens
HBHWTTGTTWDN

NHWAACAAWDVD
Transfac
Matys et al.(2006)
V$SRY_02
0.443 0.391
SRY
M11333_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRY_Q6
0.443 0.391
Sox3
M00827_2.00
Mus musculus
WDTVHNNN

NNNDBAHW
PBM
Weirauch et al.(2013)
pTH3087
0.440 0.362
Sox3
M03538_2.00
Mus musculus
RAACAATRNYATTGTTK

MAACAATRNYATTGTTY
SELEX
Jolma et al.(2013)
Sox3_1
0.440 0.362
Sox3
M03539_2.00
Mus musculus
BATCAATGBYATTGATD

HATCAATRVCATTGATV
SELEX
Jolma et al.(2013)
Sox3_2
0.440 0.362
Sox3
M03540_2.00
Mus musculus
DATGAATKNYATTCATR

YATGAATRNMATTCATH
SELEX
Jolma et al.(2013)
Sox3_3
0.440 0.362
SOX3
M05769_2.00
Homo sapiens
VYATTKTNVS

SBNAMAATRB
SELEX
Yin et al.(2017)
SOX3_FL_HT-SELEX
0.440 0.362
Sox3
M08168_2.00
Mus musculus
CCTTTGTYYB

VRRACAAAGG
ChIP-seq
Mathelier et al.(2014)
MA0514.1
0.440 0.362
SOX3
M09391_2.00
Homo sapiens
BYCWTTGTBYB

VRVACAAWGRV
Misc
Kulakovskiy et al.(2013)
SOX3_HUMAN.H11MO.0.B
0.440 0.362
Sox3
M09405_2.00
Mus musculus
VRVACAAWGGV

BCCWTTGTBYB
Misc
Kulakovskiy et al.(2013)
SOX3_MOUSE.H11MO.0.C
0.440 0.362
Sox3
M09639_2.00
Mus musculus
VACAAWRG

CYWTTGTB
Misc
Heinz et al.(2010)
NPC-Sox3_GSE33059
0.440 0.362
SOX3
M05770_2.00
Homo sapiens
BYATTGTBNN

NNVACAATRV
SELEX
Yin et al.(2017)
SOX3_FL_Methyl-HT-SELEX
0.440 0.362
Sry
M00211_2.00
Mus musculus
ATTRTNNNNN

NNNNNAYAAT
PBM
Badis et al.(2009)
Sry_2833
0.438 0.362
Sry
M09408_2.00
Mus musculus
BWTTGTTWH

DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_MOUSE.H11MO.0.B
0.438 0.362
Sox14
M00829_2.00
Mus musculus
NAACAATD

HATTGTTN
PBM
Weirauch et al.(2013)
pTH2677
0.431 0.362
Sox14
M00206_2.00
Mus musculus
NNNABAAW

WTTVTNNN
PBM
Badis et al.(2009)
Sox14_2677
0.431 0.362
SOX14
M03513_2.00
Homo sapiens
ACAMTAMCATTG

CAATGKTAKTGT
SELEX
Jolma et al.(2013)
SOX14_1
0.431 0.362
SOX14
M03514_2.00
Homo sapiens
NTGAATANCATTCAN

NTGAATGNTATTCAN
SELEX
Jolma et al.(2013)
SOX14_2
0.431 0.362
SOX14
M03515_2.00
Homo sapiens
TCAATWVCATTGA

TCAATGBWATTGA
SELEX
Jolma et al.(2013)
SOX14_3
0.431 0.362
SOX14
M05783_2.00
Homo sapiens
NYATTGWNNN

NNNWCAATRN
SELEX
Yin et al.(2017)
SOX14_eDBD_HT-SELEX
0.431 0.362
SOX14
M05785_2.00
Homo sapiens
NCGAACAATK

MATTGTTCGN
SELEX
Yin et al.(2017)
SOX14_FL_HT-SELEX
0.431 0.362
SOX14
M05784_2.00
Homo sapiens
NYATTGTNNN

NNNACAATRN
SELEX
Yin et al.(2017)
SOX14_eDBD_Methyl-HT-SELEX
0.431 0.362
SOX14
M05786_2.00
Homo sapiens
NATTGTTYGB

VCRAACAATN
SELEX
Yin et al.(2017)
SOX14_FL_Methyl-HT-SELEX
0.431 0.362
Sox21
M00208_2.00
Mus musculus
WTTVWNNNN

NNNNWBAAW
PBM
Badis et al.(2009)
Sox21_3417
0.431 0.348
SOX2
M03519_2.00
Homo sapiens
DAACAATGKYAKTGTTN

NAACAMTRMCATTGTTH
SELEX
Jolma et al.(2013)
SOX2_1
0.431 0.348
SOX21
M03497_2.00
Homo sapiens
AACAATKKYAKTGTT

AACAMTRMMATTGTT
SELEX
Jolma et al.(2013)
SOX21_1
0.431 0.348
SOX21
M03498_2.00
Homo sapiens
AACAATRKDYAKTGTT

AACAMTRHMYATTGTT
SELEX
Jolma et al.(2013)
SOX21_2
0.431 0.348
SOX21
M03499_2.00
Homo sapiens
TCAATGDYAKTGA

TCAMTRHCATTGA
SELEX
Jolma et al.(2013)
SOX21_3
0.431 0.348
SOX21
M03500_2.00
Homo sapiens
TGAATGKYAKTCA

TGAMTRMCATTCA
SELEX
Jolma et al.(2013)
SOX21_4
0.431 0.348
SOX2
M03520_2.00
Homo sapiens
VTGAATGDYATTCAN

NTGAATRHCATTCAB
SELEX
Jolma et al.(2013)
SOX2_2
0.431 0.348
SOX2
M03521_2.00
Homo sapiens
NATCAATGNYATTGAWD

HWTCAATRNCATTGATN
SELEX
Jolma et al.(2013)
SOX2_3
0.431 0.348
SOX2
M03522_2.00
Homo sapiens
NAACAATANCATTGTTH

DAACAATGNTATTGTTN
SELEX
Jolma et al.(2013)
SOX2_4
0.431 0.348
SOX2
M03523_2.00
Homo sapiens
HATCAATANCATTGATH

DATCAATGNTATTGATD
SELEX
Jolma et al.(2013)
SOX2_5
0.431 0.348
SOX2
M03524_2.00
Homo sapiens
DTGAATWNCATTCAH

DTGAATGNWATTCAH
SELEX
Jolma et al.(2013)
SOX2_6
0.431 0.348
SOX2
M05897_2.00
Homo sapiens
NACAAWRRNN

NNYYWTTGTN
SMiLE-seq
Isakova et al.(2017)
SOX2
0.431 0.348
Sox2
M08170_2.00
Mus musculus
CCWTTGTB

VACAAWGG
ChIP-seq
Mathelier et al.(2014)
MA0143.3
0.431 0.348
Sox2
M08041_2.00
Mus musculus
WHWRMADNACAAWRR

YYWTTGTNHTKYWDW
ChIP-seq
Chen et al.(2011)
SRP000217_Sox2
0.431 0.348
Sox2
M08042_2.00
Mus musculus
TTWRCATNWSAAWRV

BYWTTSWNATGYWAA
ChIP-seq
Chen et al.(2011)
SRP000712_Sox2
0.431 0.348
SOX2
M09397_2.00
Homo sapiens
BBYYWTTGTBYBB

VVRVACAAWRRVV
Misc
Kulakovskiy et al.(2013)
SOX2_HUMAN.H11MO.0.A
0.431 0.348
Sox2
M09409_2.00
Mus musculus
THWRCATNACAAWRRV

BYYWTTGTNATGYWDA
Misc
Kulakovskiy et al.(2013)
SOX2_MOUSE.H11MO.0.A
0.431 0.348
SOX2
M11327_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q3_01
0.431 0.348
SOX2
M11328_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q3
0.431 0.348
SOX2
M11329_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q4
0.431 0.348
SOX2
M11330_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q6
0.431 0.348
Sox1
M00214_2.00
Mus musculus
NNNNNWBAAW

WTTVWNNNNN
PBM
Badis et al.(2009)
Sox1_2631
0.431 0.333
Sox1
M03542_2.00
Mus musculus
VACAATWNCATTGTT

AACAATGNWATTGTB
SELEX
Jolma et al.(2013)
Sox1_1
0.431 0.333
Sox1
M03543_2.00
Mus musculus
NTGAATWNCATTCAN

NTGAATGNWATTCAN
SELEX
Jolma et al.(2013)
Sox1_2
0.431 0.333
Sox1
M03544_2.00
Mus musculus
TCAATWNCATTGA

TCAATGNWATTGA
SELEX
Jolma et al.(2013)
Sox1_3
0.431 0.333
Sox1
M03545_2.00
Mus musculus
TGAATDDNHATTCA

TGAATDNHHATTCA
SELEX
Jolma et al.(2013)
Sox1_4
0.431 0.333
D
M03969_2.00
Drosophila melanogaster
AMVGAACAAT

ATTGTTCBKT
SELEX
Nitta et al.(2015)
D_1
0.427 0.348
D
M03970_2.00
Drosophila melanogaster
NAACAATDNCATTGTTN

NAACAATGNHATTGTTN
SELEX
Nitta et al.(2015)
D_2
0.427 0.348
Sox21b
M03983_2.00
Drosophila melanogaster
NAACAMTWNCAKTGTTB

VAACAMTGNWAKTGTTN
SELEX
Nitta et al.(2015)
Sox21b_1
0.427 0.348
D
M06559_2.00
Drosophila melanogaster
BCYWTTGTTNT

ANAACAAWRGV
B1H
Mathelier et al.(2014)
MA0445.1
0.427 0.348
D
M06448_2.00
Drosophila melanogaster
BCYATTGTYNW

WNRACAATRGV
B1H
Zhu et al.(2011)
D_NAR_FBgn0000411
0.427 0.348
D
M09694_2.00
Drosophila melanogaster
RACAAWRGVH

DBCYWTTGTY
Misc
Kulakovskiy et al.(2009)
D
0.427 0.348
Sox21a
M03978_2.00
Drosophila melanogaster
NMACAMTAVCATTGTKN

NMACAATGBTAKTGTKN
SELEX
Nitta et al.(2015)
Sox21a_1
0.427 0.333
Sox21a
M03979_2.00
Drosophila melanogaster
NNACAMTANCATTGTYH

DRACAATGNTAKTGTNN
SELEX
Nitta et al.(2015)
Sox21a_2
0.427 0.333
SoxN
M03976_2.00
Drosophila melanogaster
VYGHACARTNN

NNAYTGTDCRB
SELEX
Nitta et al.(2015)
SoxN_1
0.426 0.333
SoxN
M03977_2.00
Drosophila melanogaster
NCAATNVCATTGN

NCAATGBNATTGN
SELEX
Nitta et al.(2015)
SoxN_2
0.426 0.333
Sox7
M00209_2.00
Mus musculus
NNNWBAAT

ATTVWNNN
PBM
Badis et al.(2009)
Sox7_3460
0.426 0.377
SOX7
M03516_2.00
Homo sapiens
AACAATRDNHAKTGTT

AACAMTDNHYATTGTT
SELEX
Jolma et al.(2013)
SOX7_1
0.426 0.377
SOX7
M03517_2.00
Homo sapiens
DAACAATKDYAKTGTTN

NAACAMTRHMATTGTTH
SELEX
Jolma et al.(2013)
SOX7_2
0.426 0.377
SOX7
M03518_2.00
Homo sapiens
NATGAATKDCAKTCATN

NATGAMTGHMATTCATN
SELEX
Jolma et al.(2013)
SOX7_3
0.426 0.377
SOX7
M05787_2.00
Homo sapiens
ACAATDNHATTGT

ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_HT-SELEX
0.426 0.377
SOX7
M11325_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX7_Q2
0.426 0.377
SOX7
M05788_2.00
Homo sapiens
ACAATDNHATTGT

ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_Methyl-HT-SELEX
0.426 0.377
Sox17
M00199_2.00
Mus musculus
NNNNWSAAT

ATTSWNNNN
PBM
Badis et al.(2009)
Sox17_2837
0.416 0.377
Sox17
M03533_2.00
Mus musculus
AACAATWDCATTGTT

AACAATGHWATTGTT
SELEX
Jolma et al.(2013)
Sox17_1
0.416 0.377
Sox17
M03534_2.00
Mus musculus
ATGAATWNCATTCAT

ATGAATGNWATTCAT
SELEX
Jolma et al.(2013)
Sox17_2
0.416 0.377
SOX17
M05896_2.00
Homo sapiens
DRACAATRVN

NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX17
0.416 0.377
Sox17
M02718_2.00
Mus musculus
SACAATRNN

NNYATTGTS
SELEX
Mathelier et al.(2014)
MA0078.1
0.416 0.377
Sox17
M08040_2.00
Mus musculus
RVACAAWRRVN

NBYYWTTGTBY
ChIP-seq
Chen et al.(2011)
GSE19026_Sox17_XENcells
0.416 0.377
SOX17
M09396_2.00
Homo sapiens
BCCATTKTNBN

NVNAMAATGGV
Misc
Kulakovskiy et al.(2013)
SOX17_HUMAN.H11MO.0.C
0.416 0.377
SOX17
M11323_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_01
0.416 0.377
SOX17
M11324_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_Q2
0.416 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EZF34905 Sox 152 220

Links

Other Sox family TFs
Other Trichophyton interdigitale TFs

1177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RKD2 Arabidopsis thaliana AT1G74480 D
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I
mgf022310m Mimulus guttatus mgf022310m I
mg020279m Mimulus guttatus mg020279m I
Cucsa.197700 Cucumis sativus Cucsa.197700 I
cassava35166.m1 Manihot esculenta cassava35166.m1 I
30138.m004071 Ricinus communis 30138.m004071 I
Pm024905 Prunus mume Pm024905 I
Cla019404 Citrullus lanatus Cla019404 I
Ca_27191 Cicer arietinum Ca_27191 I
Ca_13151 Cicer arietinum Ca_13151 I
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I
TRIUR3_19503 Triticum urartu TRIUR3_19503 I
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I
TCM_014009 Theobroma cacao TCM_014009 I
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I
Si008273m.g Setaria italica Si008273m.g I
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I
Lus10034456.g Linum usitatissimum Lus10034456.g I
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I
Pavir.J13146 Panicum virgatum Pavir.J13146 I
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I
MDP0000266172 Malus domestica MDP0000266172 I
MDP0000261199 Malus domestica MDP0000261199 I
Sb10g008120 Sorghum bicolor Sb10g008120 I
Lus10019100.g Linum usitatissimum Lus10019100.g I
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I
Carubv10021541m.g Capsella rubella Carubv10021541m.g I
Carubv10011133m.g Capsella rubella Carubv10011133m.g I
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I
Bra016542 Brassica rapa Bra016542 I
GLYMA17G10866 Glycine max GLYMA17G10866 I
OS06G0228950 Oryza sativa OS06G0228950 I
GLYMA05G01030 Glycine max GLYMA05G01030 I
GLYMA04G33516 Glycine max GLYMA04G33516 I
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I
GLYMA06G20881 Glycine max GLYMA06G20881 I
Bra015907 Brassica rapa Bra015907 I
Bra012122 Brassica rapa Bra012122 I
Bra008153 Brassica rapa Bra008153 I
Bo8g068090 Brassica oleracea Bo8g068090 I
Bo7g064180 Brassica oleracea Bo7g064180 I
BGIOSGA022580 Oryza indica BGIOSGA022580 I
BGIOSGA005630 Oryza indica BGIOSGA005630 I
RKD1 Arabidopsis thaliana AT1G18790 I
OMERI02G30990 Oryza meridionalis OMERI02G30990 I
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I
OPUNC06G07940 Oryza punctata OPUNC06G07940 I
ONIVA06G09450 Oryza nivara ONIVA06G09450 I
ONIVA06G04700 Oryza nivara ONIVA06G04700 I
OMERI06G09770 Oryza meridionalis OMERI06G09770 I
OGLUM02G32960 Oryza glumaepatula OGLUM02G32960 I
OBART02G32320 Oryza barthii OBART02G32320 I
OB06G17750 Oryza brachyantha OB06G17750 I
OB02G39310 Oryza brachyantha OB02G39310 I
MTR_3g435550 Medicago truncatula MTR_3g435550 I
MLOC_59560 Hordeum vulgare MLOC_59560 I
MLOC_12609 Hordeum vulgare MLOC_12609 I
GRMZM2G392306 Zea mays GRMZM2G392306 I
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N
Carubv10027579m.g Capsella rubella Carubv10027579m.g N
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N
Thhalv10009845m.g Eutrema salsugineum Thhalv10009845m.g N
RKD3 Arabidopsis thaliana AT5G66990 N