CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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U727_00429890111
(
Penicillium solitum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
U727_00429890111
T333105_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.487
0.406
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.487
0.406
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.429
0.333
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.425
0.377
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.425
0.377
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.425
0.377
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.425
0.377
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.425
0.377
SOX21
M03497_2.00
Homo sapiens
AACAATKKYAKTGTT
AACAMTRMMATTGTT
SELEX
Jolma et al.(2013)
SOX21_1
0.425
0.348
SOX21
M03498_2.00
Homo sapiens
AACAATRKDYAKTGTT
AACAMTRHMYATTGTT
SELEX
Jolma et al.(2013)
SOX21_2
0.425
0.348
SOX21
M03499_2.00
Homo sapiens
TCAATGDYAKTGA
TCAMTRHCATTGA
SELEX
Jolma et al.(2013)
SOX21_3
0.425
0.348
SOX21
M03500_2.00
Homo sapiens
TGAATGKYAKTCA
TGAMTRMCATTCA
SELEX
Jolma et al.(2013)
SOX21_4
0.425
0.348
SOX15
M03508_2.00
Homo sapiens
AACAATAMCATTGTT
AACAATGKTATTGTT
SELEX
Jolma et al.(2013)
SOX15_1
0.415
0.333
SOX15
M03509_2.00
Homo sapiens
ATCAATAMCATTGAT
ATCAATGKTATTGAT
SELEX
Jolma et al.(2013)
SOX15_2
0.415
0.333
SOX15
M03510_2.00
Homo sapiens
ATGAATAACATTCAT
ATGAATGTTATTCAT
SELEX
Jolma et al.(2013)
SOX15_3
0.415
0.333
SOX15
M05893_2.00
Homo sapiens
YYWTTGTNHN
NDNACAAWRR
SMiLE-seq
Isakova et al.(2017)
SOX15
0.415
0.333
SOX15
M11308_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX15_Q3
0.415
0.333
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KJJ28628
Sox
695
763
VPRPPNCFILYRQANHHLVKSANPGVSNNEISRILGARWNNESPEVRMQFTRLADDLKREHAIKHPDYQ
Links
Other
Sox
family TFs
Other
Penicillium solitum
TFs
526 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMAM001087
Anopheles maculatus
AMAM001087
N
ANCCAN_09768
Ancylostoma caninum
ANCCAN_09768
N
ACAC_0000775701
Angiostrongylus cantonensis
ACAC_0000775701
N
LLOJ006332
Lutzomyia longipalpis
LLOJ006332
N
BGLB013890
Biomphalaria glabrata
BGLB013890
N
BGLB009417
Biomphalaria glabrata
BGLB009417
N
BGLB006178
Biomphalaria glabrata
BGLB006178
N
AQUA008818
Anopheles quadriannulatus
AQUA008818
N
AMIN004125
Anopheles minimus
AMIN004125
N
AMEM003504
Anopheles merus
AMEM003504
N
AMEC021350
Anopheles melas
AMEC021350
N
AMEC011489
Anopheles melas
AMEC011489
N
BTMF_0001476301
Brugia timori
BTMF_0001476301
N
AFAF020113
Anopheles farauti
AFAF020113
N
AEPI000237
Anopheles epiroticus
AEPI000237
N
ADIR005529
Anopheles dirus
ADIR005529
N
ACUA001666
Anopheles culicifacies
ACUA001666
N
ACOM033136
Anopheles coluzzii
ACOM033136
N
ACHR003840
Anopheles christyi
ACHR003840
N
AATE016330
Anopheles atroparvus
AATE016330
N
AALB008401
Anopheles albimanus
AALB008401
N
SNAPOd2T00000013001
Oikopleura dioica
SNAPOd2T00000013001
N
SNAPOd2T00000006001
Oikopleura dioica
SNAPOd2T00000006001
N
OFLC_0001290601
Onchocerca flexuosa
OFLC_0001290601
N
TTAC_0001016601
Hydatigera taeniaeformis
TTAC_0001016601
N
TCNE_0000673201
Toxocara canis
TCNE_0000673201
N
TCLT_0000454301
Thelazia callipaeda
TCLT_0000454301
N
TASK_0000051701
Taenia asiatica
TASK_0000051701
N
SVUK_0000185901
Strongylus vulgaris
SVUK_0000185901
N
SSLN_0002001801
Schistocephalus solidus
SSLN_0002001801
N
SROB_0001536801
Schistosoma rodhaini
SROB_0001536801
N
SMTD_0001448601
Schistosoma mattheei
SMTD_0001448601
N
SCUD_0000076401
Schistosoma curassoni
SCUD_0000076401
N
PXEA_0000210501
Protopolystoma xenopodis
PXEA_0000210501
N
LDEC012262
Leptinotarsa decemlineata
LDEC012262
N
nOo.2.0.1.g05402
Onchocerca ochengi
nOo.2.0.1.g05402
N
nLs.2.1.2.g08039
Litomosoides sigmodontis
nLs.2.1.2.g08039
N
NBR_0000440401
Nippostrongylus brasiliensis
NBR_0000440401
N
nAv.1.0.1.g02461
Acanthocheilonema viteae
nAv.1.0.1.g02461
N
L898_g20040
Steinernema monticolum
L898_g20040
N
Hba_17474
Heterorhabditis bacteriophora
Hba_17474
N
GPUH_0001622501
Gongylonema pulchrum
GPUH_0001622501
N
EEL_0001066701
Elaeophora elaphi
EEL_0001066701
N
ECANG7_03670
Echinococcus canadensis
ECANG7_03670
N
D915_01997
Fasciola hepatica
D915_01997
N
GATA5
Echinops telfairi
ENSETEG00000019185
N
ENSTNIG00000002085
Tetraodon nigroviridis
ENSTNIG00000002085
N
GATA5
Pteropus vampyrus
ENSPVAG00000011581
N
GATA3
Procavia capensis
ENSPCAG00000005175
N
ENSMICG00000006751
Microcebus murinus
ENSMICG00000006751
N
ENSMEUG00000011815
Macropus eugenii
ENSMEUG00000011815
N
ENSMEUG00000011038
Macropus eugenii
ENSMEUG00000011038
N
ENSMEUG00000004221
Macropus eugenii
ENSMEUG00000004221
N
ENSLOCG00000005910
Lepisosteus oculatus
ENSLOCG00000005910
N
ENSLACG00000006161
Latimeria chalumnae
ENSLACG00000006161
N
ENSGMOG00000007710
Gadus morhua
ENSGMOG00000007710
N
ENSTRUG00000001265
Takifugu rubripes
ENSTRUG00000001265
N
GATA2
Cavia porcellus
ENSCPOG00000009802
N
ENSCJAG00000020654
Callithrix jacchus
ENSCJAG00000020654
N
ENSAPLG00000015903
Anas platyrhynchos
ENSAPLG00000015903
N
ENSAMXG00000012389
Astyanax mexicanus
ENSAMXG00000012389
N
E5Q_06531
Mixia osmundae
E5Q_06531
N
CPIJ008461
Culex quinquefasciatus
CPIJ008461
N
BGIBMGA000450
Bombyx mori
BGIBMGA000450
N
ACEP16989
Atta cephalotes
ACEP16989
N
ACEP15037
Atta cephalotes
ACEP15037
N
WUBG_05471
Wuchereria bancrofti
WUBG_05471
N
WBGene00241813
Onchocerca volvulus
WBGene00241813
N
LDEC000517
Leptinotarsa decemlineata
LDEC000517
N
LCUP000677
Lucilia cuprina
LCUP000677
N
Pvit_13887
Pogona vitticeps
Pvit_13887
N
Ogr18767
Ophisaurus gracilis
Ogr18767
N
Ogr02074
Ophisaurus gracilis
Ogr02074
N
Ogr01516
Ophisaurus gracilis
Ogr01516
N
Hsal_08742--XP_001121055.1_APIME
Harpegnathos saltator
Hsal_08742--XP_001121055.1_APIME
N
Cmyd_10017525
Chelonia mydas
Cmyd_10017525
N
Cflo_06216--XP_001121055.1_APIME
Camponotus floridanus
Cflo_06216--XP_001121055.1_APIME
N
Alligator_sinensis_CCG019841.1
Alligator sinensis
Alligator_sinensis_CCG019841.1
N
CpipJ_CPIJ008461
Culex pipiens
CpipJ_CPIJ008461
N
SMAR009870
Strigamia maritima
SMAR009870
N
NV16862
Nasonia vitripennis
NV16862
N
MESCA009585
Megaselia scalaris
MESCA009585
N
MESCA005245
Megaselia scalaris
MESCA005245
N
KGM_21940
Danaus plexippus
KGM_21940
N
ISCW005453
Ixodes scapularis
ISCW005453
N
HelroG92960
Helobdella robusta
HelroG92960
N
GB41785
Apis mellifera
GB41785
N
GATA5
Tursiops truncatus
ENSTTRG00000011109
N
ENSTSYG00000003698
Tarsius syrichta
ENSTSYG00000003698
N