Pvit_08123 (Pogona vitticeps)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pvit_08123 T333859_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.709 0.899
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_08123 Sox 34 102

Links

Other Sox family TFs
Other Pogona vitticeps TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.004G060500 Gossypium raimondii Gorai.004G060500 N
Traes_2AL_6990211D0 Triticum aestivum Traes_2AL_6990211D0 N
Traes_2BL_7B5109B55 Triticum aestivum Traes_2BL_7B5109B55 N
Traes_2DL_B72450387 Triticum aestivum Traes_2DL_B72450387 N
Cla012999 Citrullus lanatus Cla012999 N
Pm007242 Prunus mume Pm007242 N
30005.m001261 Ricinus communis 30005.m001261 N
cassava24109.valid.m1 Manihot esculenta cassava24109.valid.m1 N
Cucsa.095530 Cucumis sativus Cucsa.095530 N
mgf000871m Mimulus guttatus mgf000871m N
mgf025428m Mimulus guttatus mgf025428m N
Aquca_108_00051 Aquilegia coerulea Aquca_108_00051 N
Ciclev10016354m.g Citrus clementina Ciclev10016354m.g N
Ciclev10021850m.g Citrus clementina Ciclev10021850m.g N
Eucgr.G02017 Eucalyptus grandis Eucgr.G02017 N
TCM_019968 Theobroma cacao TCM_019968 N
Gorai.007G162200 Gossypium raimondii Gorai.007G162200 N
Gorai.011G138900 Gossypium raimondii Gorai.011G138900 N
Gorai.N001000 Gossypium raimondii Gorai.N001000 N
Lus10025581.g Linum usitatissimum Lus10025581.g N
Lus10025582.g Linum usitatissimum Lus10025582.g N
MDP0000184998 Malus domestica MDP0000184998 N
MDP0000716430 Malus domestica MDP0000716430 N
orange1.1g024388m.g Citrus sinensis orange1.1g024388m.g N
orange1.1g025458m.g Citrus sinensis orange1.1g025458m.g N
Pavir.Ga01503 Panicum virgatum Pavir.Ga01503 N
SapurV1A.0947s0070 Salix purpurea SapurV1A.0947s0070 N
SapurV1A.1186s0090 Salix purpurea SapurV1A.1186s0090 N
Thhalv10021333m.g Eutrema salsugineum Thhalv10021333m.g N
OMERI04G14610 Oryza meridionalis OMERI04G14610 N
Bo1g147290 Brassica oleracea Bo1g147290 N
Bo3g061340 Brassica oleracea Bo3g061340 N
Bra001258 Brassica rapa Bra001258 N
Bra029658 Brassica rapa Bra029658 N
Bra040015 Brassica rapa Bra040015 N
F775_32546 Aegilops tauschii F775_32546 N
GRMZM2G053557 Zea mays GRMZM2G053557 N
GSMUA_Achr3G19260_001 Musa acuminata GSMUA_Achr3G19260_001 N
GSMUA_Achr6G28720_001 Musa acuminata GSMUA_Achr6G28720_001 N
GSMUA_Achr9G08210_001 Musa acuminata GSMUA_Achr9G08210_001 N
MTR_2g099155 Medicago truncatula MTR_2g099155 N
OBART04G17310 Oryza barthii OBART04G17310 N
OGLUM04G17350 Oryza glumaepatula OGLUM04G17350 N
OLONG_009317 Oryza longistaminata OLONG_009317 N
BGIOSGA014805 Oryza indica BGIOSGA014805 N
ONIVA04G15620 Oryza nivara ONIVA04G15620 N
OPUNC04G15120 Oryza punctata OPUNC04G15120 N
ORGLA04G0144300 Oryza glaberrima ORGLA04G0144300 N
ORUFI04G18740 Oryza rufipogon ORUFI04G18740 N
PGSC0003DMG400020996 Solanum tuberosum PGSC0003DMG400020996 N
POPTR_0014s17210 Populus trichocarpa POPTR_0014s17210 N
POPTR_0017s05170 Populus trichocarpa POPTR_0017s05170 N
PRUPE_ppa010592mg Prunus persica PRUPE_ppa010592mg N
Sb06g021360 Sorghum bicolor Sb06g021360 N
Si010917m.g Setaria italica Si010917m.g N
Solyc08g013980.2 Solanum lycopersicum Solyc08g013980.2 N
TCM_002550 Theobroma cacao TCM_002550 N
TCM_019960 Theobroma cacao TCM_019960 N