fgenesh1_pg.C_scaffold_6000032 (Mycosphaerella fijiensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pg.C_scaffold_6000032 T334108_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_6000032 Sox 150 224

Links

Other Sox family TFs
Other Mycosphaerella fijiensis TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD16 Arabidopsis thaliana AT2G42430 D
LBD16 Vitis vinifera VIT_07s0005g03030 I
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I
TRIUR3_01477 Triticum urartu TRIUR3_01477 I
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I
Si040019m.g Setaria italica Si040019m.g I
Si037727m.g Setaria italica Si037727m.g I
Si019578m.g Setaria italica Si019578m.g I
LBD16 Arabidopsis lyrata scaffold_403099.1 I
Sb04g037550 Sorghum bicolor Sb04g037550 I
Sb01g047000 Sorghum bicolor Sb01g047000 I
Sb01g046990 Sorghum bicolor Sb01g046990 I
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I
OS03G0149100 Oryza sativa OS03G0149100 I
OS03G0149000 Oryza sativa OS03G0149000 I
OS02G0820500 Oryza sativa OS02G0820500 I
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I
Lus10024877.g Linum usitatissimum Lus10024877.g I
AC149818.2_FG009 Zea mays AC149818.2_FG009 I
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I
Pavir.J39638 Panicum virgatum Pavir.J39638 I
Pavir.J24246 Panicum virgatum Pavir.J24246 I
Pavir.J03376 Panicum virgatum Pavir.J03376 I
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I
MDP0000131964 Malus domestica MDP0000131964 I
Cla006088 Citrullus lanatus Cla006088 I
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I
Carubv10025548m.g Capsella rubella Carubv10025548m.g I
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I
Cucsa.053440 Cucumis sativus Cucsa.053440 I
cassava15612.m1 Manihot esculenta cassava15612.m1 I
Pm020629 Prunus mume Pm020629 I
GRMZM2G092483 Zea mays GRMZM2G092483 I
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I
LPERR03G03470 Leersia perrieri LPERR03G03470 I
LPERR03G03460 Leersia perrieri LPERR03G03460 I
LPERR02G31040 Leersia perrieri LPERR02G31040 I
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I
GRMZM2G092542 Zea mays GRMZM2G092542 I
MLOC_10784 Hordeum vulgare MLOC_10784 I
GRMZM2G075499 Zea mays GRMZM2G075499 I
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I
Bra016877 Brassica rapa Bra016877 I
Bra004693 Brassica rapa Bra004693 I
Bo8g092560 Brassica oleracea Bo8g092560 I
Bo4g191530 Brassica oleracea Bo4g191530 I
Bo4g016000 Brassica oleracea Bo4g016000 I
BGIOSGA011866 Oryza indica BGIOSGA011866 I
BGIOSGA011445 Oryza indica BGIOSGA011445 I
BGIOSGA005344 Oryza indica BGIOSGA005344 I
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I
OPUNC03G03520 Oryza punctata OPUNC03G03520 I
OPUNC03G03510 Oryza punctata OPUNC03G03510 I
OPUNC02G34750 Oryza punctata OPUNC02G34750 I
ONIVA03G03580 Oryza nivara ONIVA03G03580 I
ONIVA03G03570 Oryza nivara ONIVA03G03570 I
ONIVA02G40360 Oryza nivara ONIVA02G40360 I
OMERI07G01660 Oryza meridionalis OMERI07G01660 I
OMERI02G35350 Oryza meridionalis OMERI02G35350 I
MLOC_52276 Hordeum vulgare MLOC_52276 I
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I
OBART03G03830 Oryza barthii OBART03G03830 I
OBART03G03820 Oryza barthii OBART03G03820 I
OB03G13890 Oryza brachyantha OB03G13890 I
OB03G13880 Oryza brachyantha OB03G13880 I
OB02G44330 Oryza brachyantha OB02G44330 I
MLOC_61947 Hordeum vulgare MLOC_61947 I
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N
OLONG_020840 Oryza longistaminata OLONG_020840 N
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N
OMERI07G01670 Oryza meridionalis OMERI07G01670 N
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N
MLOC_10783 Hordeum vulgare MLOC_10783 N