CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sjc_0031360
(
Schistosoma japonicum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Sjc_0031360
T334974_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000002959
Sox
10
80
PKGPMSAYSCFVQVIREEHKKKHPGEQIVFSDFSKKCAERWKLMTPKEKKRFEDLAVLDRERFNREMCDYV
CPRT0000002959
Sox
100
163
PARAWSAFFFFCDEFRAKVRESNPDWKVADIAKELGRQWESCQDKAKYELLAQKDKQRYEEELT
Links
Other
Sox
family TFs
Other
Schistosoma japonicum
TFs
179 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CpipJ_CPIJ014043
Culex pipiens
CpipJ_CPIJ014043
N
0.517
WUBG_12099
Wuchereria bancrofti
WUBG_12099
N
0.450
AAEL011380
Aedes aegypti
AAEL011380
N
0.506
ACEP16613
Atta cephalotes
ACEP16613
N
0.469
ACYPI007949
Acyrthosiphon pisum
ACYPI007949
N
0.463
ADAC001494
Anopheles darlingi
ADAC001494
N
0.506
AGAP000005
Anopheles gambiae
AGAP000005
N
0.506
Aqu1.227714
Amphimedon queenslandica
Aqu1.227714
N
0.430
BGIBMGA001132
Bombyx mori
BGIBMGA001132
N
0.471
CapteG158220
Capitella teleta
CapteG158220
N
0.448
CGI_10023724
Crassostrea gigas
CGI_10023724
N
0.417
CPIJ014043
Culex quinquefasciatus
CPIJ014043
N
0.517
DAPPUDRAFT_232871
Daphnia pulex
DAPPUDRAFT_232871
N
0.466
DAPPUDRAFT_306496
Daphnia pulex
DAPPUDRAFT_306496
N
0.418
EFV53345
Trichinella spiralis
EFV53345
N
0.454
EFV57410
Trichinella spiralis
EFV57410
N
0.416
ENSAMXG00000014832
Astyanax mexicanus
ENSAMXG00000014832
N
0.430
hmg1/2
Ciona intestinalis
ENSCING00000004075
N
0.478
ENSCJAG00000014214
Callithrix jacchus
ENSCJAG00000014214
N
0.418
ENSCJAG00000022832
Callithrix jacchus
ENSCJAG00000022832
N
0.418
ENSCSAVG00000000341
Ciona savignyi
ENSCSAVG00000000341
N
0.453
hmgb2a
Danio rerio
ENSDARG00000029722
N
0.466
hmgb1a
Danio rerio
ENSDARG00000099175
N
0.424
ENSDNOG00000005537
Dasypus novemcinctus
ENSDNOG00000005537
N
0.418
ENSGMOG00000010060
Gadus morhua
ENSGMOG00000010060
N
0.417
ENSMEUG00000011289
Macropus eugenii
ENSMEUG00000011289
N
0.423
HMGB2
Macaca mulatta
ENSMMUG00000020008
N
0.417
ENSOARG00000010383
Ovis aries
ENSOARG00000010383
N
0.430
ENSOARG00000015382
Ovis aries
ENSOARG00000015382
N
0.430
ENSOARG00000015955
Ovis aries
ENSOARG00000015955
N
0.430
ENSOCUG00000004133
Oryctolagus cuniculus
ENSOCUG00000004133
N
0.416
ENSOCUG00000021132
Oryctolagus cuniculus
ENSOCUG00000021132
N
0.430
HMGB3
Oryctolagus cuniculus
ENSOCUG00000024959
N
0.423
hmgb1a
Oryzias latipes
ENSORLG00000003400
N
0.436
hmgb2b
Oryzias latipes
ENSORLG00000018687
N
0.427
ENSPANG00000007527
Papio anubis
ENSPANG00000007527
N
0.430
ENSPFOG00000004794
Poecilia formosa
ENSPFOG00000004794
N
0.416
ENSPFOG00000008464
Poecilia formosa
ENSPFOG00000008464
N
0.428
ENSPMAG00000007397
Petromyzon marinus
ENSPMAG00000007397
N
0.438
Hmgb2l1
Rattus norvegicus
ENSRNOG00000013167
N
0.436
RGD1561694
Rattus norvegicus
ENSRNOG00000029107
N
0.436
Hmgb2
Rattus norvegicus
ENSRNOG00000033321
N
0.436
HMGB2
Sus scrofa
ENSSSCG00000009704
N
0.428
hmgb1b
Takifugu rubripes
ENSTRUG00000004822
N
0.424
hmgb1a
Takifugu rubripes
ENSTRUG00000008452
N
0.447
ENSXMAG00000011106
Xiphophorus maculatus
ENSXMAG00000011106
N
0.416
Dsp1
Drosophila melanogaster
FBgn0011764
N
0.489
GA11488
Drosophila pseudoobscura
FBgn0071539
N
0.489
GF19115
Drosophila ananassae
FBgn0096126
N
0.489
GG17955
Drosophila erecta
FBgn0110175
N
0.489
GH12282
Drosophila grimshawi
FBgn0119761
N
0.489
GI10980
Drosophila mojavensis
FBgn0133743
N
0.489
GD17278
Drosophila simulans
FBgn0188840
N
0.489
GJ19445
Drosophila virilis
FBgn0206588
N
0.489
GK25058
Drosophila willistoni
FBgn0227017
N
0.489
GE17263
Drosophila yakuba
FBgn0234741
N
0.489
HelroG157726
Helobdella robusta
HelroG157726
N
0.427
HelroG157878
Helobdella robusta
HelroG157878
N
0.493
HelroG87827
Helobdella robusta
HelroG87827
N
0.533
HMEL007340
Heliconius melpomene
HMEL007340
N
0.468
ISCW017350
Ixodes scapularis
ISCW017350
N
0.496
LotgiG200052
Lottia gigantea
LotgiG200052
N
0.427
NV15664
Nasonia vitripennis
NV15664
N
0.469
PHUM006290
Pediculus humanus
PHUM006290
N
0.481
Ppa-hmg-1.2
Pristionchus pacificus
PPA02361
N
0.426
SINV22586
Solenopsis invicta
SINV22586
N
0.469
SMAR013695
Strigamia maritima
SMAR013695
N
0.498
Smp_000980
Schistosoma mansoni
Smp_000980
N
0.687
Smp_100090
Schistosoma mansoni
Smp_100090
N
0.458
Smp_103530
Schistosoma mansoni
Smp_103530
N
0.480
SPU_005572
Strongylocentrotus purpuratus
SPU_005572
N
0.432
tetur02g08260
Tetranychus urticae
tetur02g08260
N
0.463
tetur02g08340
Tetranychus urticae
tetur02g08340
N
0.459
YQE_03203
Dendroctonus ponderosae
YQE_03203
N
0.482
Cflo_05895--XP_001121384.1_APIME
Camponotus floridanus
Cflo_05895--XP_001121384.1_APIME
N
0.469
Hsal_13110--XP_001121384.1_APIME
Harpegnathos saltator
Hsal_13110--XP_001121384.1_APIME
N
0.469
Myotis_brandtii_Hmgb1_10003213
Myotis brandtii
Myotis_brandtii_Hmgb1_10003213
N
0.423
Myotis_brandtii_Hmgb1_10026956
Myotis brandtii
Myotis_brandtii_Hmgb1_10026956
N
0.429
Myotis_brandtii_Hmgb2_10018437
Myotis brandtii
Myotis_brandtii_Hmgb2_10018437
N
0.435
fgenesh2_pm.scaffold_24000033
Branchiostoma floridae
fgenesh2_pm.scaffold_24000033
N
0.491
Sakowv30042012m.g
Saccoglossus kowalevskii
Sakowv30042012m.g
N
0.447
AAI68534
Xenopus tropicalis
AAI68534
N
0.416
BAA06440
Xenopus laevis
BAA06440
N
0.425
LCUP007363
Lucilia cuprina
LCUP007363
N
0.489
LDEC006842
Leptinotarsa decemlineata
LDEC006842
N
0.493
Sjc_0051340
Schistosoma japonicum
Sjc_0051340
N
0.445
SMU15002907
Schmidtea mediterranea
SMU15002907
N
0.497
SMU15016767
Schmidtea mediterranea
SMU15016767
N
0.482
SMU15027649
Schmidtea mediterranea
SMU15027649
N
0.429
SMU15030256
Schmidtea mediterranea
SMU15030256
N
0.578
Minc03268
Meloidogyne incognita
Minc03268
N
0.441
Minc08988
Meloidogyne incognita
Minc08988
N
0.441
AALB006743
Anopheles albimanus
AALB006743
N
0.506
AARA010318
Anopheles arabiensis
AARA010318
N
0.506
AATE010886
Anopheles atroparvus
AATE010886
N
0.443
AATE018776
Anopheles atroparvus
AATE018776
N
0.506
ACUA021022
Anopheles culicifacies
ACUA021022
N
0.506
ADIR000367
Anopheles dirus
ADIR000367
N
0.417
ADIR011701
Anopheles dirus
ADIR011701
N
0.506
AEPI002924
Anopheles epiroticus
AEPI002924
N
0.506
AFAF003948
Anopheles farauti
AFAF003948
N
0.506
AFUN010134
Anopheles funestus
AFUN010134
N
0.506
AMAM015540
Anopheles maculatus
AMAM015540
N
0.506
AMEC021909
Anopheles melas
AMEC021909
N
0.506
AMEM017336
Anopheles merus
AMEM017336
N
0.506
AMIN005344
Anopheles minimus
AMIN005344
N
0.506
AQUA004962
Anopheles quadriannulatus
AQUA004962
N
0.478
ASIS000124
Anopheles sinensis
ASIS000124
N
0.506
ASIS009950
Anopheles sinensis
ASIS009950
N
0.437
BGLB010942
Biomphalaria glabrata
BGLB010942
N
0.467
MDOA008812
Musca domestica
MDOA008812
N
0.503
A_00070
Schistosoma haematobium
A_00070
N
0.442
A_05510
Schistosoma haematobium
A_05510
N
0.480
ACOC_0000768601
Angiostrongylus costaricensis
ACOC_0000768601
N
0.433
ANCCAN_10156
Ancylostoma caninum
ANCCAN_10156
N
0.464
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2
N
0.448
csin110255
Clonorchis sinensis
csin110255
N
0.520
csin112095
Clonorchis sinensis
csin112095
N
0.467
D915_00818
Fasciola hepatica
D915_00818
N
0.655
D915_15256
Fasciola hepatica
D915_15256
N
0.523
D917_01254
Trichinella nativa
D917_01254
N
0.416
D917_08189
Trichinella nativa
D917_08189
N
0.423
D918_07195
Trichuris suis
D918_07195
N
0.433
DILT_0000548601
Diphyllobothrium latum
DILT_0000548601
N
0.427
DILT_0001497901
Diphyllobothrium latum
DILT_0001497901
N
0.642
DME_0001055201
Dracunculus medinensis
DME_0001055201
N
0.432
ECANG7_02036
Echinococcus canadensis
ECANG7_02036
N
0.627
EmuJ_001049000
Echinococcus multilocularis
EmuJ_001049000
N
0.595
genemark-nMf.1.1.scaf06964-processed-gene-0.3
Meloidogyne floridensis
genemark-nMf.1.1.scaf06964-processed-gene-0.3
N
0.448
Hba_13817
Heterorhabditis bacteriophora
Hba_13817
N
0.431
HCOI00860100
Haemonchus contortus
HCOI00860100
N
0.433
HDID_0000237901
Hymenolepis diminuta
HDID_0000237901
N
0.552
HDID_0000408601
Hymenolepis diminuta
HDID_0000408601
N
0.456
HmN_000466000
Hymenolepis microstoma
HmN_000466000
N
0.552
HmN_000813000
Hymenolepis microstoma
HmN_000813000
N
0.451
HNAJ_0000974401
Hymenolepis nana
HNAJ_0000974401
N
0.455
HNAJ_0001249801
Hymenolepis nana
HNAJ_0001249801
N
0.552
L596_g22130
Steinernema carpocapsae
L596_g22130
N
0.417
L892_g17551
Steinernema scapterisci
L892_g17551
N
0.417
MCOS_0000526101
Mesocestoides corti
MCOS_0000526101
N
0.598
MCOS_0000726501
Mesocestoides corti
MCOS_0000726501
N
0.456
MhA1_Contig113.frz3.gene9
Meloidogyne hapla
MhA1_Contig113.frz3.gene9
N
0.444
NBR_0000911001
Nippostrongylus brasiliensis
NBR_0000911001
N
0.433
NECAME_09126
Necator americanus
NECAME_09126
N
0.433
nRc.2.0.1.g43473
Romanomermis culicivorax
nRc.2.0.1.g43473
N
0.426
PTRK_0000986200
Parastrongyloides trichosuri
PTRK_0000986200
N
0.448
PXEA_0000566701
Protopolystoma xenopodis
PXEA_0000566701
N
0.510
PXEA_0000637001
Protopolystoma xenopodis
PXEA_0000637001
N
0.441
PXEA_0002175501
Protopolystoma xenopodis
PXEA_0002175501
N
0.584
RSKR_0000605700
Rhabditophanes kr3021
RSKR_0000605700
N
0.429
SBAD_0000405201
Soboliphyme baturini
SBAD_0000405201
N
0.426
scaffold580-EXSNAP2012.5
Pristionchus exspectatus
scaffold580-EXSNAP2012.5
N
0.426
SCUD_0000020101
Schistosoma curassoni
SCUD_0000020101
N
0.687
SCUD_0000067701
Schistosoma curassoni
SCUD_0000067701
N
0.480
SCUD_0001034301
Schistosoma curassoni
SCUD_0001034301
N
0.442
SMRZ_0000146101
Schistosoma margrebowiei
SMRZ_0000146101
N
0.480
SMRZ_0000842001
Schistosoma margrebowiei
SMRZ_0000842001
N
0.442
SMRZ_0001808901
Schistosoma margrebowiei
SMRZ_0001808901
N
0.480
SMTD_0001017101
Schistosoma mattheei
SMTD_0001017101
N
0.442
SMTD_0001194601
Schistosoma mattheei
SMTD_0001194601
N
0.687
SMUV_0000232601
Syphacia muris
SMUV_0000232601
N
0.418
SPAL_0001030300
Strongyloides papillosus
SPAL_0001030300
N
0.448
SROB_0000153901
Schistosoma rodhaini
SROB_0000153901
N
0.687
SROB_0000500401
Schistosoma rodhaini
SROB_0000500401
N
0.458
SROB_0001061001
Schistosoma rodhaini
SROB_0001061001
N
0.480
SSLN_0000493501
Schistocephalus solidus
SSLN_0000493501
N
0.642
SSTP_0000371800
Strongyloides stercoralis
SSTP_0000371800
N
0.448
SVE_0494300
Strongyloides venezuelensis
SVE_0494300
N
0.448
T265_10726
Opisthorchis viverrini
T265_10726
N
0.430
T265_12733
Opisthorchis viverrini
T265_12733
N
0.642
T265_14643
Opisthorchis viverrini
T265_14643
N
0.520
TASK_0000460901
Taenia asiatica
TASK_0000460901
N
0.459
TELCIR_07111
Teladorsagia circumcincta
TELCIR_07111
N
0.433
TMUE_s0235000800
Trichuris muris
TMUE_s0235000800
N
0.417
TRE_0000506801
Trichobilharzia regenti
TRE_0000506801
N
0.532
TRE_0000690301
Trichobilharzia regenti
TRE_0000690301
N
0.490
TsM_000115400
Taenia solium
TsM_000115400
N
0.595
TTAC_0000225801
Hydatigera taeniaeformis
TTAC_0000225801
N
0.627
TTRE_0000338301
Trichuris trichiura
TTRE_0000338301
N
0.433