AMAG_04303 (Allomyces macrogynus)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 AMAG_04303 T342068_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.892 0.892
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.892 0.892
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.892 0.892
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.843 0.843
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.843 0.843
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.843 0.843
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.843 0.843
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.843 0.843
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.843 0.843
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.843 0.843
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.843 0.843
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.843 0.843
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.843 0.843
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AMAG_04303T0 TBP 120 201
AMAG_04303T0 TBP 209 292

Links

Other TBP family TFs
Other Allomyces macrogynus TFs

763 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0001_3341 Arabidopsis lyrata Al_scaffold_0001_3341 N 0.000
AT1G32700 Arabidopsis thaliana AT1G32700 N 0.000
BGIOSGA005806 Oryza indica BGIOSGA005806 N 0.000
BGIOSGA014451 Oryza indica BGIOSGA014451 N 0.000
BGIOSGA031347 Oryza indica BGIOSGA031347 N 0.000
Bo5g049240 Brassica oleracea Bo5g049240 N 0.000
Bo8g028900 Brassica oleracea Bo8g028900 N 0.000
Bra023280 Brassica rapa Bra023280 N 0.000
Bra035494 Brassica rapa Bra035494 N 0.000
BRADI3G34160 Brachypodium distachyon BRADI3G34160 N 0.000
BRADI3G52170 Brachypodium distachyon BRADI3G52170 N 0.000
F775_28196 Aegilops tauschii F775_28196 N 0.000
GLYMA01G02180 Glycine max GLYMA01G02180 N 0.000
GLYMA01G11390 Glycine max GLYMA01G11390 N 0.000
GLYMA01G44430 Glycine max GLYMA01G44430 N 0.000
GLYMA03G34530 Glycine max GLYMA03G34530 N 0.000
GLYMA08G36641 Glycine max GLYMA08G36641 N 0.000
GLYMA09G33770 Glycine max GLYMA09G33770 N 0.000
GLYMA10G07240 Glycine max GLYMA10G07240 N 0.000
GLYMA12G01890 Glycine max GLYMA12G01890 N 0.000
GLYMA13G21140 Glycine max GLYMA13G21140 N 0.000
GLYMA19G37220 Glycine max GLYMA19G37220 N 0.000
GRMZM2G004548 Zea mays GRMZM2G004548 N 0.000
GRMZM2G086403 Zea mays GRMZM2G086403 N 0.000
GRMZM2G091044 Zea mays GRMZM2G091044 N 0.000
GRMZM2G093270 Zea mays GRMZM2G093270 N 0.000
GRMZM2G094168 Zea mays GRMZM2G094168 N 0.000
GRMZM2G131280 Zea mays GRMZM2G131280 N 0.000
GSMUA_Achr11G17810_001 Musa acuminata GSMUA_Achr11G17810_001 N 0.000
GSMUA_Achr2G18160_001 Musa acuminata GSMUA_Achr2G18160_001 N 0.000
GSMUA_Achr4G19110_001 Musa acuminata GSMUA_Achr4G19110_001 N 0.000
GSMUA_Achr4G27280_001 Musa acuminata GSMUA_Achr4G27280_001 N 0.000
GSMUA_Achr5G03420_001 Musa acuminata GSMUA_Achr5G03420_001 N 0.000
GSMUA_Achr5G13970_001 Musa acuminata GSMUA_Achr5G13970_001 N 0.000
GSMUA_Achr5G18120_001 Musa acuminata GSMUA_Achr5G18120_001 N 0.000
GSMUA_Achr8G14740_001 Musa acuminata GSMUA_Achr8G14740_001 N 0.000
LPERR02G23300 Leersia perrieri LPERR02G23300 N 0.000
LPERR04G19240 Leersia perrieri LPERR04G19240 N 0.000
LPERR10G15280 Leersia perrieri LPERR10G15280 N 0.000
MLOC_63157 Hordeum vulgare MLOC_63157 N 0.000
MLOC_69202 Hordeum vulgare MLOC_69202 N 0.000
MTR_1g062160 Medicago truncatula MTR_1g062160 N 0.000
MTR_5g007230 Medicago truncatula MTR_5g007230 N 0.000
MTR_5g030130 Medicago truncatula MTR_5g030130 N 0.000
MTR_7g102790 Medicago truncatula MTR_7g102790 N 0.000
MTR_8g066820 Medicago truncatula MTR_8g066820 N 0.000
OB02G35810 Oryza brachyantha OB02G35810 N 0.000
OB04G30420 Oryza brachyantha OB04G30420 N 0.000
OB10G26540 Oryza brachyantha OB10G26540 N 0.000
OBART02G28660 Oryza barthii OBART02G28660 N 0.000
OBART04G23520 Oryza barthii OBART04G23520 N 0.000
OGLUM02G29250 Oryza glumaepatula OGLUM02G29250 N 0.000
OGLUM04G23440 Oryza glumaepatula OGLUM04G23440 N 0.000
OGLUM10G19490 Oryza glumaepatula OGLUM10G19490 N 0.000
OLONG_011823 Oryza longistaminata OLONG_011823 N 0.000
OLONG_023395 Oryza longistaminata OLONG_023395 N 0.000
ONIVA02G31400 Oryza nivara ONIVA02G31400 N 0.000
ONIVA04G22750 Oryza nivara ONIVA04G22750 N 0.000
ONIVA10G22010 Oryza nivara ONIVA10G22010 N 0.000
OPUNC02G26310 Oryza punctata OPUNC02G26310 N 0.000
OPUNC04G21040 Oryza punctata OPUNC04G21040 N 0.000
OPUNC10G17840 Oryza punctata OPUNC10G17840 N 0.000
ORGLA02G0246600 Oryza glaberrima ORGLA02G0246600 N 0.000
ORGLA04G0200500 Oryza glaberrima ORGLA04G0200500 N 0.000
ORGLA10G0145900 Oryza glaberrima ORGLA10G0145900 N 0.000
ORUFI02G30220 Oryza rufipogon ORUFI02G30220 N 0.000
ORUFI04G25190 Oryza rufipogon ORUFI04G25190 N 0.000
OS02G0692700 Oryza sativa OS02G0692700 N 0.000
OS04G0591100 Oryza sativa OS04G0591100 N 0.000
OS10G0574700 Oryza sativa OS10G0574700 N 0.000
PGSC0003DMG400008598 Solanum tuberosum PGSC0003DMG400008598 N 0.000
PGSC0003DMG400017518 Solanum tuberosum PGSC0003DMG400017518 N 0.000
POPTR_0001s02390 Populus trichocarpa POPTR_0001s02390 N 0.000
POPTR_0003s09160 Populus trichocarpa POPTR_0003s09160 N 0.000
POPTR_0006s12100 Populus trichocarpa POPTR_0006s12100 N 0.000
POPTR_0016s10920 Populus trichocarpa POPTR_0016s10920 N 0.000
PRUPE_ppa011266mg Prunus persica PRUPE_ppa011266mg N 0.000
PRUPE_ppa011458mg Prunus persica PRUPE_ppa011458mg N 0.000
PRUPE_ppa011630mg Prunus persica PRUPE_ppa011630mg N 0.000
Sb01g028260 Sorghum bicolor Sb01g028260 N 0.000
Sb04g031230 Sorghum bicolor Sb04g031230 N 0.000
Sb06g027000 Sorghum bicolor Sb06g027000 N 0.000
Si010911m.g Setaria italica Si010911m.g N 0.000
Si017318m.g Setaria italica Si017318m.g N 0.000
Si035718m.g Setaria italica Si035718m.g N 0.000
Solyc08g076860.2 Solanum lycopersicum Solyc08g076860.2 N 0.000
Solyc10g085800.1 Solanum lycopersicum Solyc10g085800.1 N 0.000
TCM_015701 Theobroma cacao TCM_015701 N 0.000
TCM_022356 Theobroma cacao TCM_022356 N 0.000
Traes_1AL_791D3B325 Triticum aestivum Traes_1AL_791D3B325 N 0.000
Traes_1BL_C202F3DE1 Triticum aestivum Traes_1BL_C202F3DE1 N 0.000
Traes_2AL_74EFA5757 Triticum aestivum Traes_2AL_74EFA5757 N 0.000
Traes_2BL_69847FCA6 Triticum aestivum Traes_2BL_69847FCA6 N 0.000
Traes_6DL_CF3557CFC Triticum aestivum Traes_6DL_CF3557CFC N 0.000
TRIUR3_25489 Triticum urartu TRIUR3_25489 N 0.000
TRIUR3_30366 Triticum urartu TRIUR3_30366 N 0.000
VIT_02s0012g01400 Vitis vinifera VIT_02s0012g01400 N 0.000
VIT_08s0007g04560 Vitis vinifera VIT_08s0007g04560 N 0.000
VIT_16s0039g01560 Vitis vinifera VIT_16s0039g01560 N 0.000
Ca_00735 Cicer arietinum Ca_00735 N 0.000
Ca_11505 Cicer arietinum Ca_11505 N 0.000
Ca_12361 Cicer arietinum Ca_12361 N 0.000
Ca_19047 Cicer arietinum Ca_19047 N 0.000
Cla008966 Citrullus lanatus Cla008966 N 0.000
Cla010408 Citrullus lanatus Cla010408 N 0.000
Cla016461 Citrullus lanatus Cla016461 N 0.000
Cla018029 Citrullus lanatus Cla018029 N 0.000
Pm001175 Prunus mume Pm001175 N 0.000
Pm012470 Prunus mume Pm012470 N 0.000
Pm023220 Prunus mume Pm023220 N 0.000
Pm026291 Prunus mume Pm026291 N 0.000
30054.m000824 Ricinus communis 30054.m000824 N 0.000
30078.m002228 Ricinus communis 30078.m002228 N 0.000
cassava15058.m1 Manihot esculenta cassava15058.m1 N 0.000
cassava2216.valid.m1 Manihot esculenta cassava2216.valid.m1 N 0.000
cassava37607.valid.m1 Manihot esculenta cassava37607.valid.m1 N 0.000
cassava9017.m1 Manihot esculenta cassava9017.m1 N 0.000
Cucsa.313040 Cucumis sativus Cucsa.313040 N 0.000
Cucsa.318510 Cucumis sativus Cucsa.318510 N 0.000
Cucsa.321900 Cucumis sativus Cucsa.321900 N 0.000
Cucsa.378840 Cucumis sativus Cucsa.378840 N 0.000
e_gw1.1.253.1 Physcomitrella patens e_gw1.1.253.1 N 0.000
e_gw1.6.367.1 Physcomitrella patens e_gw1.6.367.1 N 0.000
estExt_gwp_gw1.C_1330066 Physcomitrella patens estExt_gwp_gw1.C_1330066 N 0.000
fgenesh1_pg.scaffold_102000043 Physcomitrella patens fgenesh1_pg.scaffold_102000043 N 0.000
mgf006916m Mimulus guttatus mgf006916m N 0.000
mgf006925m Mimulus guttatus mgf006925m N 0.000
mgf013167m Mimulus guttatus mgf013167m N 0.000
mgf023930m Mimulus guttatus mgf023930m N 0.000
Aquca_005_00468 Aquilegia coerulea Aquca_005_00468 N 0.000
Aquca_009_01064 Aquilegia coerulea Aquca_009_01064 N 0.000
Aquca_019_00150 Aquilegia coerulea Aquca_019_00150 N 0.000
Bostr.3359s0088 Boechera stricta Bostr.3359s0088 N 0.000
Cagra.4962s0001 Capsella grandiflora Cagra.4962s0001 N 0.000
Carubv10009979m.g Capsella rubella Carubv10009979m.g N 0.000
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N 0.000
Ciclev10012756m.g Citrus clementina Ciclev10012756m.g N 0.000
Ciclev10032089m.g Citrus clementina Ciclev10032089m.g N 0.000
Eucgr.A01594 Eucalyptus grandis Eucgr.A01594 N 0.000
Eucgr.D02206 Eucalyptus grandis Eucgr.D02206 N 0.000
Eucgr.E00276 Eucalyptus grandis Eucgr.E00276 N 0.000
evm.TU.supercontig_43.104 Carica papaya evm.TU.supercontig_43.104 N 0.000
evm.TU.supercontig_5.128 Carica papaya evm.TU.supercontig_5.128 N 0.000
gene00954-v1.0-hybrid Fragaria vesca gene00954-v1.0-hybrid N 0.000
gene02186-v1.0-hybrid Fragaria vesca gene02186-v1.0-hybrid N 0.000
Gorai.001G117900 Gossypium raimondii Gorai.001G117900 N 0.000
Gorai.003G183000 Gossypium raimondii Gorai.003G183000 N 0.000
Gorai.006G159900 Gossypium raimondii Gorai.006G159900 N 0.000
Gorai.006G217100 Gossypium raimondii Gorai.006G217100 N 0.000
Gorai.007G032400 Gossypium raimondii Gorai.007G032400 N 0.000
Gorai.008G226100 Gossypium raimondii Gorai.008G226100 N 0.000
Gorai.009G411100 Gossypium raimondii Gorai.009G411100 N 0.000
Gorai.013G184000 Gossypium raimondii Gorai.013G184000 N 0.000
Lus10000482.g Linum usitatissimum Lus10000482.g N 0.000
Lus10004577.g Linum usitatissimum Lus10004577.g N 0.000
Lus10020337.g Linum usitatissimum Lus10020337.g N 0.000
Lus10027735.g Linum usitatissimum Lus10027735.g N 0.000
Lus10030968.g Linum usitatissimum Lus10030968.g N 0.000
Lus10035554.g Linum usitatissimum Lus10035554.g N 0.000
Lus10040082.g Linum usitatissimum Lus10040082.g N 0.000
MDP0000553473 Malus domestica MDP0000553473 N 0.000
MDP0000570901 Malus domestica MDP0000570901 N 0.000
orange1.1g026096m.g Citrus sinensis orange1.1g026096m.g N 0.000
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N 0.000
orange1.1g028382m.g Citrus sinensis orange1.1g028382m.g N 0.000
Pavir.Aa01152 Panicum virgatum Pavir.Aa01152 N 0.000
Pavir.Ab01769 Panicum virgatum Pavir.Ab01769 N 0.000
Pavir.Ga00766 Panicum virgatum Pavir.Ga00766 N 0.000
Pavir.Gb00818 Panicum virgatum Pavir.Gb00818 N 0.000
Pavir.J05501 Panicum virgatum Pavir.J05501 N 0.000
SapurV1A.0151s0140 Salix purpurea SapurV1A.0151s0140 N 0.000
SapurV1A.0226s0270 Salix purpurea SapurV1A.0226s0270 N 0.000
SapurV1A.0360s0060 Salix purpurea SapurV1A.0360s0060 N 0.000
SapurV1A.0555s0010 Salix purpurea SapurV1A.0555s0010 N 0.000
SapurV1A.1507s0030 Salix purpurea SapurV1A.1507s0030 N 0.000
SapurV1A.5427s0010 Salix purpurea SapurV1A.5427s0010 N 0.000
Thhalv10008750m.g Eutrema salsugineum Thhalv10008750m.g N 0.000
PK20928.1 Cannabis sativa PK20928.1 N 0.000
PK29286.1 Cannabis sativa PK29286.1 N 0.000
chr1.CM0591.460.nd Lotus japonicus chr1.CM0591.460.nd N 0.000
LjSGA_028172.2 Lotus japonicus LjSGA_028172.2 N 0.000