CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCP11 *(Arabidopsis thaliana)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	AT2G37000	T343684_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	(Direct)	(Direct)
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.905	0.408
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.897	0.430
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.896	0.331
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.895	0.401
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.893	0.387
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.893	0.380
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.893	0.380
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.893	0.380
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.893	0.380
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.889	0.366
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.889	0.366
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.889	0.366
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.889	0.345
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.886	0.387
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.885	0.359
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.884	0.352
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.884	0.352
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.884	0.352
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.884	0.352
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.882	0.352
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.882	0.352
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.880	0.331
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.879	0.359
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.878	0.359
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.876	0.352
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.876	0.352
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.869	0.359
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.869	0.359
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.863	0.366
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.862	0.352
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.860	0.317
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.860	0.310
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.858	0.345
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT2G37000.1	TCP	41	188	ARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGTKLISNWVDVAADDSSSSSSMTSPQTQTQTPQSPSCRLDLCQPIGIQYPVNGYSHMPFTAMLLEPMTTTAESEVEIAEEEERRRRHH

Links
Other TCP family TFs
Other *Arabidopsis thaliana* TFs

618 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AFUN015813	Anopheles funestus	AFUN015813	N	0.000
LCUP011585	Lucilia cuprina	LCUP011585	N	0.000
AALB002019	Anopheles albimanus	AALB002019	N	0.000
AARA005043	Anopheles arabiensis	AARA005043	N	0.000
ACHR001889	Anopheles christyi	ACHR001889	N	0.000
ACOM030546	Anopheles coluzzii	ACOM030546	N	0.000
ACUA002940	Anopheles culicifacies	ACUA002940	N	0.000
ADIR011245	Anopheles dirus	ADIR011245	N	0.000
AEPI008198	Anopheles epiroticus	AEPI008198	N	0.000
AFAF002703	Anopheles farauti	AFAF002703	N	0.000
SINV12226	Solenopsis invicta	SINV12226	N	0.000
AMAM002157	Anopheles maculatus	AMAM002157	N	0.000
AMEC008629	Anopheles melas	AMEC008629	N	0.000
AMEM005132	Anopheles merus	AMEM005132	N	0.000
AMIN006189	Anopheles minimus	AMIN006189	N	0.000
AQUA001070	Anopheles quadriannulatus	AQUA001070	N	0.000
ASIS015471	Anopheles sinensis	ASIS015471	N	0.000
ASTEI01836	Anopheles stephensi	ASTEI01836	N	0.000
MDOA011496	Musca domestica	MDOA011496	N	0.000
PPAI007775	Phlebotomus papatasi	PPAI007775	N	0.000
GI17918	Drosophila mojavensis	FBgn0140659	N	0.000
AAEL002079	Aedes aegypti	AAEL002079	N	0.000
ADAC008437	Anopheles darlingi	ADAC008437	N	0.000
AGAP008084	Anopheles gambiae	AGAP008084	N	0.000
CPIJ001883	Culex quinquefasciatus	CPIJ001883	N	0.000
Trf	Drosophila melanogaster	FBgn0010287	N	0.000
GA20441	Drosophila pseudoobscura	FBgn0080436	N	0.000
GF14757	Drosophila ananassae	FBgn0091784	N	0.000
GG10512	Drosophila erecta	FBgn0102820	N	0.000
GH11614	Drosophila grimshawi	FBgn0119094	N	0.000
CpipJ_CPIJ001883	Culex pipiens	CpipJ_CPIJ001883	N	0.000
GL24756	Drosophila persimilis	FBgn0162344	N	0.000
GM16720	Drosophila sechellia	FBgn0171633	N	0.000
GD23502	Drosophila simulans	FBgn0194881	N	0.000
GJ17690	Drosophila virilis	FBgn0204859	N	0.000
GK15318	Drosophila willistoni	FBgn0217323	N	0.000
GE18732	Drosophila yakuba	FBgn0236124	N	0.000
GB54865	Apis mellifera	GB54865	N	0.000
NV15957	Nasonia vitripennis	NV15957	N	0.000

TCP11 (Arabidopsis thaliana) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

618 Related TFs

TCP11 **(Arabidopsis thaliana)
TCP**