BRADI2G59240 (Brachypodium distachyon)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 BRADI2G59240 T343808_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.962 0.607
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.960 0.557
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.958 0.533
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.958 0.525
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.957 0.500
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.957 0.500
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.957 0.500
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.957 0.500
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.953 0.508
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.953 0.500
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.953 0.500
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.953 0.500
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.952 0.541
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.952 0.541
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.952 0.516
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.952 0.516
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.951 0.484
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.950 0.525
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.950 0.533
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.950 0.533
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.950 0.533
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.950 0.533
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.948 0.475
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.944 0.475
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.940 0.467
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.936 0.492
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.936 0.492
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.936 0.484
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.932 0.508
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.929 0.484
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.929 0.484
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.928 0.451
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.928 0.443
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.867 0.418
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.867 0.418
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G59240.1 TCP 86 317

Links

Other TCP family TFs
Other Brachypodium distachyon TFs

650 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.000
BHLH122 Arabidopsis thaliana AT1G51140 D 0.000
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.000
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.000
mgf016092m Mimulus guttatus mgf016092m I 0.000
e_gw1.83.237.1 Physcomitrella patens e_gw1.83.237.1 I 0.000
e_gw1.272.41.1 Physcomitrella patens e_gw1.272.41.1 I 0.000
Cucsa.143260 Cucumis sativus Cucsa.143260 I 0.000
30169.m006403 Ricinus communis 30169.m006403 I 0.000
Cla006394 Citrullus lanatus Cla006394 I 0.000
Ca_18899 Cicer arietinum Ca_18899 I 0.000
Ca_14223 Cicer arietinum Ca_14223 I 0.000
Ca_07284 Cicer arietinum Ca_07284 I 0.000
Ca_02662 Cicer arietinum Ca_02662 I 0.000
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.000
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.000
TCM_040564 Theobroma cacao TCM_040564 I 0.000
Si030166m.g Setaria italica Si030166m.g I 0.000
Si029614m.g Setaria italica Si029614m.g I 0.000
Si013950m.g Setaria italica Si013950m.g I 0.000
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.000
PK20089.1 Cannabis sativa PK20089.1 I 0.000
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.000
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.000
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.000
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.000
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.000
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.000
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I 0.000
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.000
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.000
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.000
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.000
MDP0000307685 Malus domestica MDP0000307685 I 0.000
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.000
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.000
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.000
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.000
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.000
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.000
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.000
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.000
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.000
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.000
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.000
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.000
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.000
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.000
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.000
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.000
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.000
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.000
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.000
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.000
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.000
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.000
Bra018896 Brassica rapa Bra018896 I 0.000
Bra016886 Brassica rapa Bra016886 I 0.000
Bo6g024810 Brassica oleracea Bo6g024810 I 0.000
Bo4g191390 Brassica oleracea Bo4g191390 I 0.000
Bo4g015860 Brassica oleracea Bo4g015860 I 0.000
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.000
MTR_7g092540 Medicago truncatula MTR_7g092540 I 0.000
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.000
OS04G0489600 Oryza sativa OS04G0489600 I 0.000
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.000
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.000
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.000
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.000
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.000
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.000
OBART04G16900 Oryza barthii OBART04G16900 I 0.000
OB04G24170 Oryza brachyantha OB04G24170 I 0.000
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.000
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.000
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.000
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.000
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.000
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.000
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.000
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.000
estExt_fgenesh1_pg.C_2130035 Physcomitrella patens estExt_fgenesh1_pg.C_2130035 N 0.000
GRMZM5G879527 Zea mays GRMZM5G879527 N 0.000