CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Solyc08g080150.1 *(Solanum lycopersicum)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	Solyc08g080150.1	T344424_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.962	0.608
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.958	0.608
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.958	0.608
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.958	0.608
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.955	0.560
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.954	0.568
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.954	0.568
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.952	0.504
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.952	0.504
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.952	0.504
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.952	0.504
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.950	0.496
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.950	0.504
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.950	0.568
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.949	0.472
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.946	0.568
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.946	0.456
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.946	0.456
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.946	0.456
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.946	0.456
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.945	0.472
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.945	0.448
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.943	0.480
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.938	0.448
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.931	0.448
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.927	0.440
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.927	0.440
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.920	0.432
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.910	0.416
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.910	0.416
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.909	0.416
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.905	0.408
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.905	0.400
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.850	0.360
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.850	0.360
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Solyc08g080150.1.1	TCP	74	198	SSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEQAEQSIIEATGTGTVPAIAVSVNGTLKIPTSSPASNPEIDENHPQKRRRKSSNSEFIDVGSLNRNAANVSQFAPVTT

Links
Other TCP family TFs
Other *Solanum lycopersicum* TFs

645 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
MDP0000171602	Malus domestica	MDP0000171602	N	0.000
Aquca_060_00005	Aquilegia coerulea	Aquca_060_00005	N	0.000
Ciclev10025470m.g	Citrus clementina	Ciclev10025470m.g	N	0.000
Eucgr.I00704	Eucalyptus grandis	Eucgr.I00704	N	0.000
evm.TU.supercontig_6.17	Carica papaya	evm.TU.supercontig_6.17	N	0.000
gene05757-v1.0-hybrid	Fragaria vesca	gene05757-v1.0-hybrid	N	0.000
Gorai.003G030400	Gossypium raimondii	Gorai.003G030400	N	0.000
Gorai.008G083500	Gossypium raimondii	Gorai.008G083500	N	0.000
MDP0000165587	Malus domestica	MDP0000165587	N	0.000
Cucsa.103160	Cucumis sativus	Cucsa.103160	N	0.000
MDP0000687763	Malus domestica	MDP0000687763	N	0.000
MDP0000822651	Malus domestica	MDP0000822651	N	0.000
MDP0000840369	Malus domestica	MDP0000840369	N	0.000
orange1.1g035867m.g	Citrus sinensis	orange1.1g035867m.g	N	0.000
SapurV1A.0461s0030	Salix purpurea	SapurV1A.0461s0030	N	0.000
SapurV1A.0865s0070	Salix purpurea	SapurV1A.0865s0070	N	0.000
PK04147.1	Cannabis sativa	PK04147.1	N	0.000
chr2.CM0168.260.nc	Lotus japonicus	chr2.CM0168.260.nc	N	0.000
TCM_000801	Theobroma cacao	TCM_000801	N	0.000
GLYMA11G05110	Glycine max	GLYMA11G05110	N	0.000
GLYMA17G17400	Glycine max	GLYMA17G17400	N	0.000
MTR_4g097080	Medicago truncatula	MTR_4g097080	N	0.000
MTR_5g015490	Medicago truncatula	MTR_5g015490	N	0.000
PGSC0003DMG400021444	Solanum tuberosum	PGSC0003DMG400021444	N	0.000
SHR	Populus trichocarpa	POPTR_0012s06430	N	0.000
PRUPE_ppa004454mg	Prunus persica	PRUPE_ppa004454mg	N	0.000
Solyc02g092370.1	Solanum lycopersicum	Solyc02g092370.1	N	0.000
GLYMA01G40180	Glycine max	GLYMA01G40180	N	0.000
SHR	Vitis vinifera	VIT_07s0129g00030	N	0.000
Ca_02226	Cicer arietinum	Ca_02226	N	0.000
Ca_09352	Cicer arietinum	Ca_09352	N	0.000
Cla014238	Citrullus lanatus	Cla014238	N	0.000
Pm002381	Prunus mume	Pm002381	N	0.000
29661.m000923	Ricinus communis	29661.m000923	N	0.000
cassava32963.m1	Manihot esculenta	cassava32963.m1	N	0.000
cassava7505.valid.m1	Manihot esculenta	cassava7505.valid.m1	N	0.000

Solyc08g080150.1 (Solanum lycopersicum) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

645 Related TFs

Solyc08g080150.1 **(Solanum lycopersicum)
TCP**