CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Aquca_014_00153 *(Aquilegia coerulea)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Aquca_014_00153	T344691_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.964	0.477
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.962	0.457
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.960	0.444
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.956	0.470
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.953	0.450
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.953	0.450
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.953	0.450
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.953	0.450
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.950	0.424
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.950	0.424
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.947	0.437
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.947	0.437
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.947	0.444
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.943	0.377
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.941	0.391
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.940	0.417
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.940	0.417
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.940	0.417
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.938	0.391
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.938	0.404
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.938	0.358
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.938	0.358
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.938	0.358
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.938	0.358
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.938	0.358
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.937	0.371
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.937	0.397
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.937	0.397
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.936	0.371
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.936	0.391
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.931	0.384
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.921	0.364
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.921	0.351
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.866	0.344
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.866	0.344
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Aquca_014_00153.1	TCP	124	336	RSSKDRHTKVDGRGRRIRMPAVCAARVFQLTKELGHKSDGETIEWLLHQSESAIIAATGTGTVPANFSTLNTSLRREHTTSSLSTLETLPSSKTVSNPFPFAHINDQGIPQTTMLGFHPHQQQQQHHLHYSMIHPNQSMETLSSEQHDGGSGGGREMNGNYLGKRFREDLFREESKPQLENSESNLSATNKSPRTSIQLNIHDHEQANVGATA

Links
Other TCP family TFs
Other *Aquilegia coerulea* TFs

642 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSSSCG00000025433	Sus scrofa	ENSSSCG00000025433	I	0.000
ASTEI11507	Anopheles stephensi	ASTEI11507	I	0.000
AFUN004907	Anopheles funestus	AFUN004907	I	0.000
ACHR005921	Anopheles christyi	ACHR005921	I	0.000
AARA002866	Anopheles arabiensis	AARA002866	I	0.000
LCUP013861	Lucilia cuprina	LCUP013861	I	0.000
Cmyd_10009831	Chelonia mydas	Cmyd_10009831	I	0.000
Alligator_sinensis_CCG000599.1	Alligator sinensis	Alligator_sinensis_CCG000599.1	I	0.000
MESCA011260	Megaselia scalaris	MESCA011260	I	0.000
GH25280	Drosophila grimshawi	FBgn0132735	I	0.000
ENSAMXG00000002783	Astyanax mexicanus	ENSAMXG00000002783	I	0.000
Ebf1	Rattus norvegicus	ENSRNOG00000028845	I	0.000
ENSOARG00000012916	Ovis aries	ENSOARG00000012916	I	0.000
ENSLACG00000017503	Latimeria chalumnae	ENSLACG00000017503	I	0.000
EBF1	Equus caballus	ENSECAG00000007964	I	0.000
ENSDNOG00000036735	Dasypus novemcinctus	ENSDNOG00000036735	I	0.000
si:ch211-51e8.2	Danio rerio	ENSDARG00000092635	I	0.000
ENSCSAG00000016062	Chlorocebus sabaeus	ENSCSAG00000016062	I	0.000
ENSAMXG00000021198	Astyanax mexicanus	ENSAMXG00000021198	I	0.000

Aquca_014_00153 (Aquilegia coerulea) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

642 Related TFs

Aquca_014_00153 **(Aquilegia coerulea)
TCP**