CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bostr.0556s0373 *(Boechera stricta)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Bostr.0556s0373	T344700_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.974	0.681
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.972	0.672
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.971	0.613
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.971	0.613
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.971	0.613
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.971	0.613
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.969	0.597
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.963	0.588
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.957	0.496
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.957	0.529
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.957	0.529
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.957	0.529
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.957	0.529
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.957	0.496
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.956	0.479
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.956	0.479
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.956	0.479
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.955	0.504
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.955	0.504
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.952	0.471
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.952	0.504
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.951	0.521
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.950	0.496
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.944	0.454
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.944	0.454
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.940	0.479
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.939	0.487
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.939	0.479
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.939	0.479
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.935	0.496
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.934	0.504
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.934	0.504
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.931	0.479
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.885	0.429
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.885	0.429
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bostr.0556s0373.1.p	TCP	77	325	SSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASAAGSVSNHHQGGSLTAGLMISHDLDGGSSSGRPPNWGIGGGDGASRSNLPTGLWPNVAGFGSGVPTSGLMSEGAGYRIGFPGFDFPGVGPMSFASMLGGAGGNHNQMPGLELGLSQEGNVGVLNPPSFTQIYQHMGQAQAQAQAQAQAQPQGRVLHHIHHNHEDHQQESGEKDDSQGSG

Links
Other TCP family TFs
Other *Boechera stricta* TFs

655 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
VHR2	Saccharomyces cerevisiae	YER064C	D	0.000
VHR1	Saccharomyces cerevisiae	YIL056W	D	0.000
10921_YIL056W	Saccharomyces mikatae	10921_YIL056W	I	0.000
TPHA_0J00900	Tetrapisispora phaffii	TPHA_0J00900	I	0.000
ZBAI_00133	Zygosaccharomyces bailii	ZBAI_00133	I	0.000
ZBAI_05302	Zygosaccharomyces bailii	ZBAI_05302	I	0.000
ZYRO0C08250g	Zygosaccharomyces rouxii	ZYRO0C08250g	I	0.000
Scas_Contig701.7	Saccharomyces castellii	Scas_Contig701.7	I	0.000
Scas_Contig704.29	Saccharomyces castellii	Scas_Contig704.29	I	0.000
TDEL_0H01980	Torulaspora delbrueckii	TDEL_0H01980	I	0.000
11035_YIL056W	Saccharomyces paradoxus	11035_YIL056W	I	0.000
11559_YIL056W	Saccharomyces bayanus	11559_YIL056W	I	0.000
6292_YER064C	Saccharomyces paradoxus	6292_YER064C	I	0.000
6651_YER064C	Saccharomyces mikatae	6651_YER064C	I	0.000
7027_YER064C	Saccharomyces bayanus	7027_YER064C	I	0.000
KLTH0A04444g	Kluyveromyces thermotolerans	KLTH0A04444g	I	0.000
Kwal_5842	Kluyveromyces waltii	Kwal_5842	I	0.000
SAKL0F08734g	Lachancea kluyveri	SAKL0F08734g	I	0.000
KNAG_0L01530	Kazachstania naganishii	KNAG_0L01530	I	0.000
AGOS_ADL067C	Ashbya gossypii	AGOS_ADL067C	I	0.000
CAGL0J03014g	Candida glabrata	CAGL0J03014g	I	0.000
Ecym_4329	Eremothecium cymbalariae	Ecym_4329	I	0.000
KAFR_0I01770	Kazachstania africana	KAFR_0I01770	I	0.000
KAFR_0L00930	Kazachstania africana	KAFR_0L00930	I	0.000
KLLA0_C08151g	Kluyveromyces lactis	KLLA0_C08151g	I	0.000
KLTH0A04444g	Lachancea thermotolerans	KLTH0A04444g	I	0.000
KNAG_0D01580	Kazachstania naganishii	KNAG_0D01580	I	0.000
AACERI_AaceriADL067C	Saccharomycetaceae sp ashbya aceri	AACERI_AaceriADL067C	I	0.000
Kpol_1066p52	Vanderwaltozyma polyspora	Kpol_1066p52	I	0.000
LALA0_S01e02388g	Lachancea lanzarotensis	LALA0_S01e02388g	I	0.000
NCAS_0A13540	Naumovozyma castellii	NCAS_0A13540	I	0.000
NCAS_0E03320	Naumovozyma castellii	NCAS_0E03320	I	0.000
NDAI_0A02490	Naumovozyma dairenensis	NDAI_0A02490	I	0.000
NDAI_0E04810	Naumovozyma dairenensis	NDAI_0E04810	I	0.000
SKUD_176205	Saccharomyces kudriavzevii	SKUD_176205	I	0.000
TBLA_0C04650	Tetrapisispora blattae	TBLA_0C04650	I	0.000

Bostr.0556s0373 (Boechera stricta) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

655 Related TFs

Bostr.0556s0373 **(Boechera stricta)
TCP**