Gorai.009G398700 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.009G398700 T344874_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.829 0.554
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.829 0.554
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.829 0.554
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.829 0.554
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G398700.1 TCP 44 99
Gorai.009G398700.2 TCP 44 99
Gorai.009G398700.3 TCP 44 99
Gorai.009G398700.4 TCP 44 99
Gorai.009G398700.5 TCP 44 99

Links

Other TCP family TFs
Other Gossypium raimondii TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pou3f4 Mus musculus ENSMUSG00000056854 D 0.000
POU3F4 Homo sapiens ENSG00000196767 D 0.000
Pou3f4 Rattus norvegicus ENSRNOG00000002784 I 0.000
ENSOARG00000006191 Ovis aries ENSOARG00000006191 I 0.000
POU3F4 Oryctolagus cuniculus ENSOCUG00000010927 I 0.000
POU3F4 Otolemur garnettii ENSOGAG00000002820 I 0.000
ENSPANG00000019402 Papio anubis ENSPANG00000019402 I 0.000
ENSPPYG00000020510 Pongo abelii ENSPPYG00000020510 I 0.000
ENSPSIG00000000094 Pelodiscus sinensis ENSPSIG00000000094 I 0.000
POU3F4 Pan troglodytes ENSPTRG00000040705 I 0.000
POU3F4 Pteropus vampyrus ENSPVAG00000001305 I 0.000
ENSMPUG00000020194 Mustela putorius furo ENSMPUG00000020194 I 0.000
POU3F4 Sus scrofa ENSSSCG00000012454 I 0.000
ENSSTOG00000026467 Ictidomys tridecemlineatus ENSSTOG00000026467 I 0.000
POU3F4 Vicugna pacos ENSVPAG00000010779 I 0.000
Alligator_sinensis_CCG017363.1 Alligator sinensis Alligator_sinensis_CCG017363.1 I 0.000
Cmyd_10014303 Chelonia mydas Cmyd_10014303 I 0.000
ENSP00000362296-D1 Bos grunniens ENSP00000362296-D1 I 0.000
ENSP00000362296 Macaca fascicularis ENSP00000362296 I 0.000
Myotis_brandtii_POU3F4_10020378 Myotis brandtii Myotis_brandtii_POU3F4_10020378 I 0.000
Pvit_02954 Pogona vitticeps Pvit_02954 I 0.000
Pou3f4 Dipodomys ordii ENSDORG00000006273 I 0.000
ENSAMXG00000026471 Astyanax mexicanus ENSAMXG00000026471 I 0.000
POU3F4 Bos taurus ENSBTAG00000015712 I 0.000
POU3F4 Canis familiaris ENSCAFG00000017368 I 0.000
POU3F4 Choloepus hoffmanni ENSCHOG00000002799 I 0.000
POU3F4 Callithrix jacchus ENSCJAG00000002526 I 0.000
POU3F4 Cavia porcellus ENSCPOG00000003372 I 0.000
ENSCSAG00000000074 Chlorocebus sabaeus ENSCSAG00000000074 I 0.000
POU3F4 Dasypus novemcinctus ENSDNOG00000004912 I 0.000
ENSAMEG00000019562 Ailuropoda melanoleuca ENSAMEG00000019562 I 0.000
POU3F4 Equus caballus ENSECAG00000002519 I 0.000
POU3F4 Felis catus ENSFCAG00000011964 I 0.000
POU3F4 Loxodonta africana ENSLAFG00000015688 I 0.000
ENSLOCG00000017491 Lepisosteus oculatus ENSLOCG00000017491 I 0.000
POU3F4 Microcebus murinus ENSMICG00000017301 I 0.000
POU3F4 Myotis lucifugus ENSMLUG00000004140 I 0.000
POU3F4 Macaca mulatta ENSMMUG00000003112 I 0.000
POU3F4 Monodelphis domestica ENSMODG00000014279 I 0.000