CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Lus10037190.g *(Linum usitatissimum)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Lus10037190.g	T344905_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.975	0.730
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.975	0.730
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.975	0.730
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.975	0.730
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.971	0.721
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.970	0.712
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.966	0.658
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.963	0.586
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.963	0.586
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.963	0.586
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.959	0.640
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.959	0.550
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.958	0.559
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.958	0.559
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.957	0.640
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.957	0.640
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.957	0.568
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.957	0.586
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.955	0.532
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.955	0.577
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.955	0.523
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.955	0.523
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.955	0.523
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.955	0.523
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.955	0.550
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.955	0.532
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.952	0.532
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.947	0.532
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.946	0.523
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.946	0.541
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.945	0.550
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.945	0.550
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.945	0.559
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.892	0.468
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.892	0.468
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Lus10037190	TCP	95	283	TSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTVSASHHRHTSSYFAAAAAAAAGGIPSFANSLGFSSNDVTAPLFLHGVPTKQEFHGGGGGGGSSREEDRSSPPEKSNDERKDQDRDREQDLFASHQQHHHHQMMMAAAAA

Links
Other TCP family TFs
Other *Linum usitatissimum* TFs

656 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
TT8	Arabidopsis thaliana	AT4G09820	I	0.000
Thhalv10027709m.g	Eutrema salsugineum	Thhalv10027709m.g	I	0.000
gene32494-v1.0-hybrid	Fragaria vesca	gene32494-v1.0-hybrid	I	0.000
Carubv10004345m.g	Capsella rubella	Carubv10004345m.g	I	0.000
Carubv10002462m.g	Capsella rubella	Carubv10002462m.g	I	0.000
Cagra.1664s0001	Capsella grandiflora	Cagra.1664s0001	I	0.000
Bostr.7200s0145	Boechera stricta	Bostr.7200s0145	I	0.000
Bostr.25463s0338	Boechera stricta	Bostr.25463s0338	I	0.000
Pm023805	Prunus mume	Pm023805	I	0.000
PRUPE_ppa002762mg	Prunus persica	PRUPE_ppa002762mg	I	0.000
GL3	Arabidopsis lyrata	fgenesh2_kg.7__3280__AT5G41315.1	I	0.000
TT8	Arabidopsis lyrata	fgenesh2_kg.6__2968__AT4G09820.1	I	0.000
Bra025508	Brassica rapa	Bra025508	I	0.000
Bo4g141990	Brassica oleracea	Bo4g141990	I	0.000
GL3	Arabidopsis thaliana	AT5G41315	I	0.000
SELMODRAFT_73360	Selaginella moellendorffii	SELMODRAFT_73360	N	0.000
SELMODRAFT_87033	Selaginella moellendorffii	SELMODRAFT_87033	N	0.000
EGL3	Arabidopsis lyrata	fgenesh2_kg.2__120__AT1G63650.2	N	0.000
Bostr.29223s0199	Boechera stricta	Bostr.29223s0199	N	0.000
Bo9g086920	Brassica oleracea	Bo9g086920	N	0.000
Cagra.2104s0007	Capsella grandiflora	Cagra.2104s0007	N	0.000
Bo9g086910	Brassica oleracea	Bo9g086910	N	0.000
Carubv10019965m.g	Capsella rubella	Carubv10019965m.g	N	0.000
BHLH2	Arabidopsis thaliana	AT1G63650	N	0.000

Lus10037190.g (Linum usitatissimum) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

656 Related TFs

Lus10037190.g **(Linum usitatissimum)
TCP**