Carubv10022162m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10022162m.g T355982_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.853 0.773
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.835 0.614
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.827 0.591
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022162m WRKY 98 143

Links

Other WRKY family TFs
Other Capsella rubella TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10029807m.g Citrus clementina Ciclev10029807m.g N 0.000
Si013894m.g Setaria italica Si013894m.g N 0.000
Solyc11g066420.1 Solanum lycopersicum Solyc11g066420.1 N 0.000
TCM_041585 Theobroma cacao TCM_041585 N 0.000
TRIUR3_12142 Triticum urartu TRIUR3_12142 N 0.000
VIT_06s0061g00780 Vitis vinifera VIT_06s0061g00780 N 0.000
Ca_07000 Cicer arietinum Ca_07000 N 0.000
Cla001892 Citrullus lanatus Cla001892 N 0.000
Pm001162 Prunus mume Pm001162 N 0.000
29589.m001269 Ricinus communis 29589.m001269 N 0.000
cassava27114.m1 Manihot esculenta cassava27114.m1 N 0.000
cassava28521.m1 Manihot esculenta cassava28521.m1 N 0.000
Cucsa.200410 Cucumis sativus Cucsa.200410 N 0.000
mgf025993m Mimulus guttatus mgf025993m N 0.000
Aquca_009_01096 Aquilegia coerulea Aquca_009_01096 N 0.000
Sb07g023890 Sorghum bicolor Sb07g023890 N 0.000
Ciclev10029984m.g Citrus clementina Ciclev10029984m.g N 0.000
Eucgr.B03926 Eucalyptus grandis Eucgr.B03926 N 0.000
Eucgr.J00391 Eucalyptus grandis Eucgr.J00391 N 0.000
gene01102-v1.0-hybrid Fragaria vesca gene01102-v1.0-hybrid N 0.000
Gorai.006G104700 Gossypium raimondii Gorai.006G104700 N 0.000
Gorai.009G090000 Gossypium raimondii Gorai.009G090000 N 0.000
MDP0000224892 Malus domestica MDP0000224892 N 0.000
MDP0000610922 Malus domestica MDP0000610922 N 0.000
orange1.1g042026m.g Citrus sinensis orange1.1g042026m.g N 0.000
orange1.1g044007m.g Citrus sinensis orange1.1g044007m.g N 0.000
Pavir.Fa00049 Panicum virgatum Pavir.Fa00049 N 0.000
Pavir.Fb02219 Panicum virgatum Pavir.Fb02219 N 0.000
SapurV1A.0360s0140 Salix purpurea SapurV1A.0360s0140 N 0.000
chr3.CM0070.360.nc Lotus japonicus chr3.CM0070.360.nc N 0.000
OMERI04G02190 Oryza meridionalis OMERI04G02190 N 0.000
BGIOSGA026480 Oryza indica BGIOSGA026480 N 0.000
BRADI3G12490 Brachypodium distachyon BRADI3G12490 N 0.000
GLYMA11G19810 Glycine max GLYMA11G19810 N 0.000
GLYMA12G08680 Glycine max GLYMA12G08680 N 0.000
GLYMA12G30285 Glycine max GLYMA12G30285 N 0.000
GLYMA13G39610 Glycine max GLYMA13G39610 N 0.000
GSMUA_Achr11G02230_001 Musa acuminata GSMUA_Achr11G02230_001 N 0.000
GSMUA_Achr1G15330_001 Musa acuminata GSMUA_Achr1G15330_001 N 0.000
LPERR08G20460 Leersia perrieri LPERR08G20460 N 0.000
OB08G30610 Oryza brachyantha OB08G30610 N 0.000
OBART04G02230 Oryza barthii OBART04G02230 N 0.000
OGLUM04G01880 Oryza glumaepatula OGLUM04G01880 N 0.000
OGLUM08G25260 Oryza glumaepatula OGLUM08G25260 N 0.000
OLONG_023180 Oryza longistaminata OLONG_023180 N 0.000
AMTR_s00140p00061590 Amborella trichopoda AMTR_s00140p00061590 N 0.000
OMERI08G18590 Oryza meridionalis OMERI08G18590 N 0.000
ONIVA08G18580 Oryza nivara ONIVA08G18580 N 0.000
OPUNC04G02200 Oryza punctata OPUNC04G02200 N 0.000
OPUNC08G21710 Oryza punctata OPUNC08G21710 N 0.000
ORGLA04G0016600 Oryza glaberrima ORGLA04G0016600 N 0.000
ORGLA08G0191700 Oryza glaberrima ORGLA08G0191700 N 0.000
ORUFI04G02970 Oryza rufipogon ORUFI04G02970 N 0.000
ORUFI08G26260 Oryza rufipogon ORUFI08G26260 N 0.000
OS04G0165200 Oryza sativa OS04G0165200 N 0.000
OS08G0562300 Oryza sativa OS08G0562300 N 0.000
PGSC0003DMG400000419 Solanum tuberosum PGSC0003DMG400000419 N 0.000
POPTR_0004s22670 Populus trichocarpa POPTR_0004s22670 N 0.000
PRUPE_ppa019036mg Prunus persica PRUPE_ppa019036mg N 0.000