PVAR5_4882 (Byssochlamys spectabilis)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 PVAR5_4882 T382531_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02525
M02596_2.00 		Neurospora crassa
NNNNHCGGNN
NNCCGDNNNN		 PBM
Weirauch et al.(2014)
pTH8964 		0.563 0.718
ANIA_09147
M02574_2.00 		Aspergillus nidulans
NNNNHCGGNN
NNCCGDNNNN		 PBM
Weirauch et al.(2014)
pTH8347 		0.562 0.795
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GAD96232 Zinc cluster 102 145

Links

Other Zinc cluster family TFs
Other Byssochlamys spectabilis TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL78 Arabidopsis thaliana AT5G65330 D
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I
Carubv10007591m.g Capsella rubella Carubv10007591m.g I
Carubv10006654m.g Capsella rubella Carubv10006654m.g I
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I
Bostr.3751s0025 Boechera stricta Bostr.3751s0025 I
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I
Bra031864 Brassica rapa Bra031864 I
Bo00615s090 Brassica oleracea Bo00615s090 I
AGL75 Arabidopsis thaliana AT5G41200 I
AGL76 Arabidopsis thaliana AT5G40120 I
AGL98 Arabidopsis thaliana AT5G39810 I
AGL81 Arabidopsis thaliana AT5G39750 I
AGL77 Arabidopsis thaliana AT5G38740 I
AGL105 Arabidopsis thaliana AT5G37415 I
AGL52 Arabidopsis thaliana AT4G11250 I
AGL51 Arabidopsis thaliana AT4G02235 I
Bra025607 Brassica rapa Bra025607 N