RAV2 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT1G68840 T000434_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV2
M01609_2.00		 Arabidopsis thaliana
RCAACATH
DATGTTGY		 PBM
Weirauch et al.(2014)
pTH8279		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.860 0.860
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.860 0.860
TEM1
M01605_2.00 		Arabidopsis thaliana
RCAACATW
WATGTTGY		 PBM
Weirauch et al.(2014)
pTH8264 		0.875 0.939
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.860 0.860
RAV1
M01645_2.00 		Arabidopsis thaliana
NNNNVDCABN
NVTGHBNNNN		 PBM
Weirauch et al.(2014)
pTH8249 		0.872 0.878
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.860 0.860
ARF14
M01647_2.00 		Arabidopsis thaliana
NNVACAKN
NMTGTBNN		 PBM
Weirauch et al.(2014)
pTH8296 		0.867 0.878
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.860 0.860
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.860 0.860
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.780 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01609_2.00 AP2 51 100

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G68840.1 AP2 63 112
AT1G68840.1 B3 188 293
AT1G68840.2 AP2 63 112

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003640 Calypte anna Aan_R003640 I 0.000
Aan_R014715 Calypte anna Aan_R014715 I 0.000
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.000
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.000
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.000
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.000
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.000
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.000
ENSAMEG00000004878 Ailuropoda melanoleuca ENSAMEG00000004878 I 0.000
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.000
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.000
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.000
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.000
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.000
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.000
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.000
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.000
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.000
ENSBTAP00000008704-D1 Bos grunniens ENSBTAP00000008704-D1 I 0.000
ENSCING00000012018 Ciona intestinalis ENSCING00000012018 I 0.000
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.000
ENSCSAG00000004897 Chlorocebus sabaeus ENSCSAG00000004897 I 0.000
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.000
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.000
ENSCSAVG00000009575 Ciona savignyi ENSCSAVG00000009575 I 0.000
ENSECAG00000008016 Equus caballus ENSECAG00000008016 I 0.000
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.000
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.000
ENSGACG00000004834 Gasterosteus aculeatus ENSGACG00000004834 I 0.000
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.000
ENSGALG00000014639 Gallus gallus ENSGALG00000014639 I 0.000
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.000
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.000
ENSLOCG00000011983 Lepisosteus oculatus ENSLOCG00000011983 I 0.000
ENSMEUG00000009702 Macropus eugenii ENSMEUG00000009702 I 0.000
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.000
ENSMGAG00000003540 Meleagris gallopavo ENSMGAG00000003540 I 0.000
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.000
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.000
ENSMPUG00000001825 Mustela putorius furo ENSMPUG00000001825 I 0.000
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.000
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.000
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.000
ENSNLEG00000017337 Nomascus leucogenys ENSNLEG00000017337 I 0.000
ENSOARG00000006674 Ovis aries ENSOARG00000006674 I 0.000
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.000
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.000
ENSONIG00000006298 Oreochromis niloticus ENSONIG00000006298 I 0.000
ENSP00000228682 Macaca fascicularis ENSP00000228682 I 0.000
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.000
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.000
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.000
ENSPANG00000017044 Papio anubis ENSPANG00000017044 I 0.000
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.000
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.000
ENSPFOG00000019294 Poecilia formosa ENSPFOG00000019294 I 0.000
ENSPPYG00000004689 Pongo abelii ENSPPYG00000004689 I 0.000
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.000
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.000
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.000
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.000
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.000
ENSSHAG00000006652 Sarcophilus harrisii ENSSHAG00000006652 I 0.000
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.000
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.000
ENSSTOG00000020366 Ictidomys tridecemlineatus ENSSTOG00000020366 I 0.000
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.000
ENSXMAG00000001777 Xiphophorus maculatus ENSXMAG00000001777 I 0.000
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.000
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.000
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.000
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.000
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.000
GLI1 Bos taurus ENSBTAG00000006631 I 0.000
GLI1 Canis familiaris ENSCAFG00000000223 I 0.000
GLI1 Callithrix jacchus ENSCJAG00000007324 I 0.000
GLI1 Cavia porcellus ENSCPOG00000005414 I 0.000
gli1 Danio rerio ENSDARG00000101244 I 0.000
Gli1 Dipodomys ordii ENSDORG00000007124 I 0.000
GLI1 Equus caballus ENSECAG00000011246 I 0.000
GLI1 Echinops telfairi ENSETEG00000006674 I 0.000
GLI1 Felis catus ENSFCAG00000002081 I 0.000
GLI1 Homo sapiens ENSG00000111087 D 0.000
GLI1 Gorilla gorilla ENSGGOG00000001974 I 0.000
GLI1 Loxodonta africana ENSLAFG00000022910 I 0.000
GLI1 Myotis lucifugus ENSMLUG00000001013 I 0.000
GLI1 Macaca mulatta ENSMMUG00000022058 I 0.000
Gli1 Mus musculus ENSMUSG00000025407 D 0.000
GLI1 Oryctolagus cuniculus ENSOCUG00000011128 I 0.000
GLI1 Otolemur garnettii ENSOGAG00000005219 I 0.000
GLI1 Ochotona princeps ENSOPRG00000006483 I 0.000
GLI1 Procavia capensis ENSPCAG00000015756 I 0.000
GLI1 Pan troglodytes ENSPTRG00000005133 I 0.000
GLI1 Pteropus vampyrus ENSPVAG00000012109 I 0.000
Gli1 Rattus norvegicus ENSRNOG00000025120 I 0.000
GLI1 Tursiops truncatus ENSTTRG00000013086 I 0.000
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.000
GLI2 Bos taurus ENSBTAG00000011682 I 0.000
GLI2 Canis familiaris ENSCAFG00000004821 I 0.000
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.000
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.000
GLI2 Felis catus ENSFCAG00000014531 I 0.000
GLI2 Homo sapiens ENSG00000074047 D 0.000
GLI2 Gallus gallus ENSGALG00000011630 I 0.000
GLI2 Gorilla gorilla ENSGGOG00000009653 I 0.000
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.000
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.000
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.000
Gli2 Mus musculus ENSMUSG00000048402 D 0.000
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.000
GLI2 Otolemur garnettii ENSOGAG00000032438 I 0.000
GLI2 Procavia capensis ENSPCAG00000001704 I 0.000
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.000
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.000
GLI2 Sus scrofa ENSSSCG00000015733 I 0.000
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.000
GLI2 Tursiops truncatus ENSTTRG00000002058 I 0.000
gli2b Danio rerio ENSDARG00000020884 I 0.000
gli2b Oryzias latipes ENSORLG00000012490 I 0.000
gli2b Tetraodon nigroviridis ENSTNIG00000010251 I 0.000
gli2b Tetraodon nigroviridis ENSTNIG00000013668 I 0.000
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.000
gli2b Takifugu rubripes ENSTRUG00000007692 I 0.000
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.000
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.000
GLI3 Bos taurus ENSBTAG00000010671 I 0.000
GLI3 Canis familiaris ENSCAFG00000003535 I 0.000
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.000
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.000
gli3 Danio rerio ENSDARG00000052131 I 0.000
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.000
GLI3 Equus caballus ENSECAG00000009281 I 0.000
GLI3 Echinops telfairi ENSETEG00000003955 I 0.000
GLI3 Felis catus ENSFCAG00000011989 I 0.000
GLI3 Homo sapiens ENSG00000106571 D 0.000
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.000
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.000
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.000
GLI3 Microcebus murinus ENSMICG00000010785 I 0.000
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.000
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.000
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.000
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.000
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.000
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.000
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.000
GLI3 Procavia capensis ENSPCAG00000015092 I 0.000
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.000
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.000
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.000
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.000
gli3.L Xenopus laevis XB-GENE-865509 I 0.000
HelroG111329 Helobdella robusta HelroG111329 I 0.000
Myotis_brandtii_GLI1_10018379 Myotis brandtii Myotis_brandtii_GLI1_10018379 I 0.000
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.000
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.000
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.000
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.000
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.000
Tal_R006208 Tyto alba Tal_R006208 I 0.000
Tal_R009020 Tyto alba Tal_R009020 I 0.000
XP_002933449 Xenopus tropicalis XP_002933449 I 0.000
XP_002933450 Xenopus tropicalis XP_002933450 I 0.000