OBART06G06190 (Oryza barthii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OBART06G06190 T003138_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.691 0.860
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.691 0.860
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.688 0.860
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.688 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART06G06190.1 AP2 10 61

Links

Other AP2 family TFs
Other Oryza barthii TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.812
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.698
Bo6g086740 Brassica oleracea Bo6g086740 I 0.698
Bo6g119120 Brassica oleracea Bo6g119120 I 0.679
Bo8g102870 Brassica oleracea Bo8g102870 I 0.688
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.691
Bra003780 Brassica rapa Bra003780 I 0.691
Bra031069 Brassica rapa Bra031069 I 0.688
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.689
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.698
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.688
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.688
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.698
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.683
ERF017 Arabidopsis thaliana AT1G19210 D 0.688
ERF018 Arabidopsis thaliana AT1G74930 D 0.691
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.704
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.691
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.685
F775_23111 Aegilops tauschii F775_23111 I 0.689
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.688
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.685
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.686
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.698
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.700
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.678
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.698
mgf017314m Mimulus guttatus mgf017314m N 0.679
mgf021940m Mimulus guttatus mgf021940m I 0.679
mgf024162m Mimulus guttatus mgf024162m I 0.683
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.711
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.711
OB06G15740 Oryza brachyantha OB06G15740 N 0.697
OB08G24280 Oryza brachyantha OB08G24280 I 0.698
OBART08G16950 Oryza barthii OBART08G16950 I 0.698
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.814
OGLUM06G08330 Oryza glumaepatula OGLUM06G08330 N 0.679
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.698
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.814
OMERI06G09430 Oryza meridionalis OMERI06G09430 N 0.679
ONIVA06G07190 Oryza nivara ONIVA06G07190 I 0.814
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.698
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.698
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.685
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.691
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.814
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.812
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.698
OS08G0454000 Oryza sativa OS08G0454000 I 0.698
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.691
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.698
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.698
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.693
PGSC0003DMG400023295 Solanum tuberosum PGSC0003DMG400023295 N 0.679
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.704
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.687
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.683
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.687
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.687
Si008104m.g Setaria italica Si008104m.g I 0.741
Si015027m.g Setaria italica Si015027m.g I 0.698
Si019636m.g Setaria italica Si019636m.g I 0.691
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.704
Solyc07g042230.1 Solanum lycopersicum Solyc07g042230.1 N 0.677
TCM_037486 Theobroma cacao TCM_037486 I 0.684
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.694
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.691
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.692