ORUFI04G26530 (Oryza rufipogon)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 ORUFI04G26530 T004033_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.731 0.755
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.731 0.755
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.731 0.755
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.731 0.755
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.722 0.735
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.722 0.735
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.705 0.816
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.705 0.816
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.705 0.816
ERF8
M01608_2.00 		Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK		 PBM
Weirauch et al.(2014)
pTH8095 		0.700 0.796
ERF8
M06586_2.00 		Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN		 Dap-seq
OMalley et al.(2016)
ERF8_col_a 		0.700 0.796
ERF8
M06587_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ERF8_colamp_a 		0.700 0.796
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.699 0.796
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.699 0.694
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.697 0.796
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.697 0.796
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.692 0.816
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.692 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI04G26530.1 AP2 24 75

Links

Other AP2 family TFs
Other Oryza rufipogon TFs

627 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA031426 Oryza indica BGIOSGA031426 I 0.000
GLYMA01G32890 Glycine max GLYMA01G32890 I 0.000
GLYMA02G00981 Glycine max GLYMA02G00981 N 0.000
GLYMA03G32747 Glycine max GLYMA03G32747 I 0.000
GLYMA06G22790 Glycine max GLYMA06G22790 N 0.000
GRMZM2G030744 Zea mays GRMZM2G030744 I 0.000
MLOC_10815 Hordeum vulgare MLOC_10815 I 0.000
MLOC_49032 Hordeum vulgare MLOC_49032 N 0.000
MLOC_77331 Hordeum vulgare MLOC_77331 I 0.000
OB03G34880 Oryza brachyantha OB03G34880 N 0.000
OB06G13990 Oryza brachyantha OB06G13990 I 0.000
OB10G25310 Oryza brachyantha OB10G25310 I 0.000
OBART10G18190 Oryza barthii OBART10G18190 I 0.000
OLONG_008764 Oryza longistaminata OLONG_008764 N 0.000
OLONG_014962 Oryza longistaminata OLONG_014962 I 0.000
OLONG_024366 Oryza longistaminata OLONG_024366 N 0.000
ONIVA10G20730 Oryza nivara ONIVA10G20730 N 0.000
OPUNC10G16560 Oryza punctata OPUNC10G16560 I 0.000
ORGLA10G0133200 Oryza glaberrima ORGLA10G0133200 I 0.000
ORUFI10G19390 Oryza rufipogon ORUFI10G19390 N 0.000
OS10G0556200 Oryza sativa OS10G0556200 I 0.000
Pavir.Ia02188 Panicum virgatum Pavir.Ia02188 I 0.000
PGSC0003DMG400024523 Solanum tuberosum PGSC0003DMG400024523 N 0.000
Sb01g029220 Sorghum bicolor Sb01g029220 N 0.000
Si035334m.g Setaria italica Si035334m.g I 0.000
Thhalv10017520m.g Eutrema salsugineum Thhalv10017520m.g N 0.000
Traes_5AL_85F3BE385 Triticum aestivum Traes_5AL_85F3BE385 N 0.000
Traes_5DL_C6C077BB9 Triticum aestivum Traes_5DL_C6C077BB9 N 0.000
Traes_6AL_842E10085 Triticum aestivum Traes_6AL_842E10085 N 0.000
Traes_6DL_C8198CD4A Triticum aestivum Traes_6DL_C8198CD4A N 0.000
Traes_7BS_F67ED5C9E Triticum aestivum Traes_7BS_F67ED5C9E I 0.000
Traes_7DS_0536E73E5 Triticum aestivum Traes_7DS_0536E73E5 I 0.000